AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00483 ATGGCGTCGATGGCTACAACCTTCGCCTCAGCCTCATCTCTCTCCACCAAAACCAAAACCAAAACCTCTTTCTTCGATCAATCATCCTTCCATGGCGTTCCGGTCTCTTCTCCGATCCGGATCCAGCAACTCAAATCCAGCAATAACAGAAACATGCCGATCTCCATGTCCGCTGCTCCGTACGATCTCGGATCCTTCACGTTTCAACCGATCAAAGAATCGATCGTCTCTCGTGAAATGACCAGACGTTACATGACTGATATGATTACGTATGCTGATACCGACGTCGTTGTCGTCGGCGCTGGCTCCGCCGGTCTCTCTTGTGCATATGAACTTAGCAAAAACCCTAACGTTCAGGTAGCCATCATTGAGCAGTCTGTGAGCCCCGGTGGCGGAGCATGGCTCGGAGGACAACTGTTTTCCGCCATGGTGGTCCGCAAACCCGCACACCACTTCCTTGACGAGCTCGAGATCGAGTACGACGAGCAAGAAGACTATGTCGTCATCAAGCACGCTGCTCTGTTCACCTCCACGATCATGAGCAAGCTTTTGGCTAGACCAAATGTTAAGCTCTTTAACGCGGTTGCAGCCGAGGACTTAATCATTAAGGGAGGAAGAGTGGGTGGTGTTGTGACTAATTGGGCTTTGGTGTCGATGAATCACGACACACAATCATGTATGGACCCGAATGTGATGGAGGCTAAGGTGGTTGTGAGCTCATGTGGTCATGATGGTCCCATGGGTGCGACTGGTGTGAAGCGGTTGAGGAGTGTTGGGATGATCGAGAGTGTTCCGGGGATGAAAGCGCTCGACATGAACACTGCCGAGGATGAAATTGTGAAGATGACTAGAGAGGTTGTTCCGGGCATGATTGTTACCGGAATGGAAGTTGCGGAGATCGACGGATCTCCGAGAATGGGACCAACATTTGGGGCTATGATGATATCTGGACAGAAGGCTGCTCATTTGGCATTGAAGGCGTTGGGGCTACCAAATGCATTGGACGGAACAAGCGTCGGAACCATGCAACCGGAGCTGATCCTGGCTGCTGCTGATTCCGGTGAGAGTGTGGATGCCTAG 1080 51.57 MASMATTFASASSLSTKTKTKTSFFDQSSFHGVPVSSPIRIQQLKSSNNRNMPISMSAAPYDLGSFTFQPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALDMNTAEDEIVKMTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTSVGTMQPELILAAADSGESVDA 359
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00483 359 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 11 337 IPR027495 GO:0009228(InterPro)
Dapi7g00483 359 Pfam Thi4 family 77 310 - -
Dapi7g00483 359 SUPERFAMILY FAD-NAD(P)-binding domain 51 321 IPR036188 -
Dapi7g00483 359 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 73 328 IPR002922 -
Dapi7g00483 359 Gene3D - 62 92 - -
Dapi7g00483 359 PANTHER THIAMINE THIAZOLE SYNTHASE 15 358 - -
Dapi7g00483 359 Gene3D - 93 328 IPR036188 -
Dapi7g00483 359 FunFam Thiamine thiazole synthase, chloroplastic 93 328 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00483 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
251741 Dapi7g00483 Dapi23g00501
387134 Dapi23g00501 Dapi7g00483
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1900937 Dapi Dapi16g01763 Dapi-Chr16:60771060 Dapi7g00483 Dapi-Chr7:10660843
2035315 Dapi Dapi23g00501 Dapi-Chr23:11270775 Dapi7g00483 Dapi-Chr7:10660843