AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chna2g00845 | ATGGCGAAACTATTCGTAGTTGCCGGGCTTCTTAGTCTTTTCTTAATGATGCAAAATGGTAATTCATACCAGTTCATGGTTGGAGGTTCCGGCAATTGGAGTCTTGCATCAACTGCCTATAACCAATGGGCGGAAAAAACCCGTTTTCAAATTGGAGACACTGTTTTATTTAATTATCAAGCTGGGAAGGACTCGGTTGTTGAAGTAAGTAAAGAAGATTACGACAACTGCAACTCGGCATCACCCATTGCAAAATACACTGATGGTCACTCCGACGTCAAGTTGGAAAAATCTGGGCCTCATTATTTCATTAGCGGGCTTGTGGAAAACTGTAAAAACAACGAGAAGATTGTGATTGTTGTCTTGGCAGATAGAAGCCAGTCACCTCCAAGCTCACCTCCTTCACCAGCTCCGGCAGGAGAAGAGTCTCCCTCTCCTCCTCCGGCACCTGCCACAGAAGATTATAACCCAACTTCAGCTCCAAGTGACGCGTCCTCAGTTGTCACAAGTTTCATTTACTCAATTGTTGCTTTTGGTGGCTCTTCGCTTCTGTTTGTGTTTTGA | 564 | 44.5 | MAKLFVVAGLLSLFLMMQNGNSYQFMVGGSGNWSLASTAYNQWAEKTRFQIGDTVLFNYQAGKDSVVEVSKEDYDNCNSASPIAKYTDGHSDVKLEKSGPHYFISGLVENCKNNEKIVIVVLADRSQSPPSSPPSPAPAGEESPSPPPAPATEDYNPTSAPSDASSVVTSFIYSIVAFGGSSLLFVF | 187 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chna2g00845 | 187 | PANTHER | BLUE COPPER PROTEIN | 13 | 138 | IPR039391 | GO:0009055(InterPro)|GO:0046658(PANTHER) | |
| Chna2g00845 | 187 | CDD | OsENODL1-like | 23 | 122 | IPR041846 | - | |
| Chna2g00845 | 187 | FunFam | Early nodulin-like protein 1 | 22 | 126 | - | - | |
| Chna2g00845 | 187 | Pfam | Plastocyanin-like domain | 33 | 113 | IPR003245 | GO:0009055(InterPro) | |
| Chna2g00845 | 187 | Gene3D | - | 23 | 133 | IPR008972 | - | |
| Chna2g00845 | 187 | ProSiteProfiles | Phytocyanin domain profile. | 23 | 123 | IPR003245 | GO:0009055(InterPro) | |
| Chna2g00845 | 187 | MobiDBLite | consensus disorder prediction | 129 | 154 | - | - | |
| Chna2g00845 | 187 | MobiDBLite | consensus disorder prediction | 124 | 164 | - | - | |
| Chna2g00845 | 187 | SUPERFAMILY | Cupredoxins | 22 | 122 | IPR008972 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chna2g00845 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 58653 | Chna2g00845 | Chna5g00543 | |
| 58654 | Chna2g00845 | Chna6g03800 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 1587792 | Chna | Chna2g00845 | Chna-Chr2:65361116 | Chna7g04048 | Chna-Chr7:334299706 | |
| 1624042 | Chna | Chna4g00118 | Chna-Chr4:4702220 | Chna2g00845 | Chna-Chr2:65361116 | |
| 1626052 | Chna | Chna6g00007 | Chna-Chr6:486300 | Chna2g00845 | Chna-Chr2:65361116 | |
| 1627245 | Chna | Chna6g04592 | Chna-Chr6:364901100 | Chna2g00845 | Chna-Chr2:65361116 | |
| 1629327 | Chna | Chna9g00181 | Chna-Chr9:6073494 | Chna2g00845 | Chna-Chr2:65361116 | |
| 1632193 | Chna | Chna2g00845 | Chna-Chr2:65361116 | Chna5g00543 | Chna-Chr5:27903270 | |
| 1632357 | Chna | Chna2g00845 | Chna-Chr2:65361116 | Chna6g03800 | Chna-Chr6:325421163 |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Chna5g00725 | ACH | 4 | 346 | PhytocyaNIN gene family | AT4G27520 | 37.596 | 1.87e-54 | 181.0 | |
| Chna7g03399 | ACH | 14 | 150 | PhytocyaNIN gene family | AT1G79800 | 40.0 | 4.44e-34 | 118.0 | |
| Chna7g00540 | . | 33 | 158 | PhytocyaNIN gene family | AT2G25060 | 40.909 | 3.85e-27 | 99.0 | |
| Chna6g04592 | . | 6 | 131 | PhytocyaNIN gene family | AT3G20570 | 34.375 | 9.20e-18 | 78.6 | |
| Chna4g02068 | . | 3 | 135 | PhytocyaNIN gene family | AT2G27035 | 42.446 | 1.09e-36 | 122.0 | |
| Chna3g03140 | . | 1 | 160 | PhytocyaNIN gene family | AT1G64640 | 50.0 | 3.93e-48 | 154.0 | |
| Chna1g01147 | . | 12 | 179 | PhytocyaNIN gene family | AT1G08500 | 38.824 | 9.99e-36 | 123.0 | |
| Chna9g00181 | . | 42 | 173 | PhytocyaNIN gene family | AT4G31840 | 35.075 | 8.39e-20 | 80.5 | |
| Chna5g04247 | . | 5 | 152 | PhytocyaNIN gene family | AT5G15350 | 39.333 | 9.83e-39 | 129.0 | |
| Chna7g03748 | . | 18 | 138 | PhytocyaNIN gene family | AT5G57920 | 46.281 | 4.37e-35 | 120.0 | |
| Chna6g00007 | . | 6 | 131 | PhytocyaNIN gene family | AT3G20570 | 33.594 | 7.07e-17 | 76.3 | |
| Chna5g00543 | ACH | 9 | 186 | PhytocyaNIN gene family | AT3G20570 | 44.974 | 1.29e-45 | 148.0 | |
| Chna4g02067 | . | 2 | 168 | PhytocyaNIN gene family | AT5G15350 | 48.503 | 1.34e-56 | 174.0 | |
| Chna5g00668 | ACH | 4 | 329 | PhytocyaNIN gene family | AT4G27520 | 41.791 | 1.22e-58 | 192.0 | |
| Chna00039427g00054 | . | 41 | 136 | PhytocyaNIN gene family | AT1G17800 | 40.625 | 8.02e-21 | 80.1 | |
| Chna5g04321 | . | 5 | 152 | PhytocyaNIN gene family | AT5G15350 | 39.333 | 9.21e-39 | 129.0 | |
| Chna4g00118 | . | 14 | 180 | PhytocyaNIN gene family | AT2G25060 | 33.14 | 1.23e-22 | 87.4 | |
| Chna2g01326 | . | 15 | 137 | PhytocyaNIN gene family | AT1G17800 | 37.903 | 1.69e-15 | 66.2 | |
| Chna2g00845 | ACH | 14 | 188 | PhytocyaNIN gene family | AT3G20570 | 42.857 | 7.70e-47 | 150.0 | |
| Chna9g03034 | . | 10 | 201 | PhytocyaNIN gene family | AT1G08500 | 57.812 | 6.31e-71 | 214.0 | |
| Chna4g00414 | ACH | 9 | 146 | PhytocyaNIN gene family | AT1G79800 | 44.203 | 2.25e-37 | 126.0 | |
| Chna2g00745 | ACH | 21 | 180 | PhytocyaNIN gene family | AT5G53870 | 46.584 | 2.53e-43 | 147.0 | |
| Chna4g00359 | . | 9 | 146 | PhytocyaNIN gene family | AT1G79800 | 44.203 | 1.41e-38 | 129.0 | |
| Chna6g03800 | ACH | 7 | 133 | PhytocyaNIN gene family | AT3G20570 | 47.244 | 2.60e-42 | 139.0 | |
| Chna6g04779 | . | 16 | 167 | PhytocyaNIN gene family | AT2G25060 | 26.582 | 6.94e-07 | 46.6 | |
| Chna4g00848 | . | 5 | 127 | PhytocyaNIN gene family | AT3G18590 | 50.407 | 5.56e-40 | 132.0 |