AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chmo14g00949 | ATGAACATGTCGCATGTAATTTCTTCATTTTCTTTTGGTAAGAAGATCACTCCGAGGGCGATGAGTGATATTAAGCGAATACTACCTTACATTGGCGTAAGCCATGACAAGTTGAATGGCAAGACATATCTCACTGACCCAGACGATCATGCAAATGTTACAGTAGAGCATTATCTTCAAGTTGTAAAGACTGAGGTAATGAGGTCATCTCATCAACTGATTGAGGATTACGAGTATACAGCACATAGTAGCTTGGTACATGCTTATTCGATCCCTGTTGTGAAGTTCCATTATGAGCCATCCCCAATGCAGGTCTTAGTTACAGAAAATCCCAAATCATTTTCTCATTTCATCACCAACGTCTGTGCTATTATCGGTGGTGTTTTCACGGTTGCTGGGATACTGGATTCGATTCTGCACAATACATTGAGACTAGTGAAAAAAGTTGAACTAGGGAAGAACTTTTAG | 468 | 39.96 | MNMSHVISSFSFGKKITPRAMSDIKRILPYIGVSHDKLNGKTYLTDPDDHANVTVEHYLQVVKTEVMRSSHQLIEDYEYTAHSSLVHAYSIPVVKFHYEPSPMQVLVTENPKSFSHFITNVCAIIGGVFTVAGILDSILHNTLRLVKKVELGKNF | 155 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chmo14g00949 | 155 | Pfam | Endoplasmic reticulum vesicle transporter | 1 | 136 | IPR012936 | - | |
| Chmo14g00949 | 155 | PANTHER | ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN | 1 | 149 | IPR045888 | GO:0005783(PANTHER)|GO:0030134(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chmo14g00949 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 48111 | Chmo14g00949 | Chmo16g01017 | |
| 48112 | Chmo14g00949 | Chmo17g00928 | |
| 48113 | Chmo14g00949 | Chmo18g01002 | |
| 48114 | Chmo14g00949 | Chmo24g05201 | |
| 216478 | Chmo13g01008 | Chmo14g00949 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 1305777 | Chmo | Chmo14g00949 | Chmo-Chr14:47115900 | Chmo5g00183 | Chmo-Chr5:7762608 | |
| 1493255 | Chmo | Chmo13g01008 | Chmo-Chr13:52655009 | Chmo14g00949 | Chmo-Chr14:47115900 | |
| 1500067 | Chmo | Chmo14g00949 | Chmo-Chr14:47115900 | Chmo15g00890 | Chmo-Chr15:51089160 | |
| 1501077 | Chmo | Chmo14g00949 | Chmo-Chr14:47115900 | Chmo16g01017 | Chmo-Chr16:43554657 | |
| 1501124 | Chmo | Chmo14g00949 | Chmo-Chr14:47115900 | Chmo17g00928 | Chmo-Chr17:39095010 | |
| 1501177 | Chmo | Chmo14g00949 | Chmo-Chr14:47115900 | Chmo18g01002 | Chmo-Chr18:43130562 | |
| 1501758 | Chmo | Chmo14g00949 | Chmo-Chr14:47115900 | Chmo22g05179 | Chmo-Chr22:305304633 | |
| 1501986 | Chmo | Chmo14g00949 | Chmo-Chr14:47115900 | Chmo23g05140 | Chmo-Chr23:299931127 | |
| 1502152 | Chmo | Chmo14g00949 | Chmo-Chr14:47115900 | Chmo24g05201 | Chmo-Chr24:302082218 |