Gene detail

AGRP Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Hetu17g02341	ATGGAGGTACTTCCTTTTCCCCTATATAATCCCACACCATCTAACACACATCTCCGTACTCATTCACCTTCAACAAGGACCTTCAACCGAGCTCTTTCTTGTTCATCAATGGCTTCCATGACTACCACCACCTTCACCTCATCTCTCTCCAACAAGACCTCCTATCAATCATCCTTCCATGGGGTTTCTCCGATGATGCGGATCCAATCCCTCGTCGTTAAATCAAACAAAAACAACAACAACACGCCTATCACCATGTCTTACGACCTCGGTCAATTCACCTTTCAACCCATCAAGGAGGCCATCGTGTCTCGTGAAATGACCAGGAGGTACATGACTGATATGATCACCTACGCCGATACGGATGTTGTCGTCGTTGGTGCTGGTTCCGCTGGTCTCTCCTGCGCTTACGAGCTTAGCAAGAACCCTAACGTTCAGGTAGCCATCATCGAGCAATCTGTGAGCCCTGGTGGCGGAGCATGGCTGGGAGGACAACTCTTCTCCGCCATGGTTGTCCGCAAACCCGCACACCACTTCCTTGACGAGCTTGAGATCGAGTACGACGAGCAAGAAGACTACGTGGTCATCAAACACGCGGCTCTGTTCACATCGACCATCATGAGCAAGCTTTTGGCTAGGCCAAACGTGAAGCTCTTCAATGCGGTTGCTGCGGAGGATTTGATCATCAAGGAAGGGAGAGTTGGTGGCGTTGTAACCAACTGGGCTTTGGTGTCGATGAACCATGACACACAGTCATGCATGGACCCTAACGTCATGGAGGCTAAGGTGGTTGTCAGCTCATGTGGTCATGATGGTCCCATGGGTGCCACCGGAGTCAAGCGCCTCAGGAGCGTTGGGATGATTGAAAGCGTTCCCGGGATGAAAGCTCTCAACATGAACACTGCCGAAGACGCAATCGTCAAGCTCACAAGAGAGATTGTTCCGGGTATGATCGTTACCGGAATGGAAGTTGCAGAGATTGATGGATCTCCTAGAATGGGGCCAACATTTGGAGCTATGATGATATCTGGACAGAAAGCGGCTCATCTGGCATTGAAGGCCCTCGGGCTGCCGAATGCATTGGATGGGACAAGCCTTCACCCCGAACTGATCCTTGCGGTTGCTGATTCTGGCGAGACCGTTGATGCCTAA	1152	51.13	MEVLPFPLYNPTPSNTHLRTHSPSTRTFNRALSCSSMASMTTTTFTSSLSNKTSYQSSFHGVSPMMRIQSLVVKSNKNNNNTPITMSYDLGQFTFQPIKEAIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKEGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALNMNTAEDAIVKLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTSLHPELILAVADSGETVDA	383

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Hetu17g02341	383	Hamap	Thiamine thiazole synthase, chloroplastic [THI4].	38	364	IPR027495	GO:0009228(InterPro)
	Hetu17g02341	383	NCBIfam	sulfide-dependent adenosine diphosphate thiazole synthase	100	355	IPR002922	-
	Hetu17g02341	383	PANTHER	THIAMINE THIAZOLE SYNTHASE	45	382	-	-
	Hetu17g02341	383	Pfam	Thi4 family	104	337	-	-
	Hetu17g02341	383	Gene3D	-	120	364	IPR036188	-
	Hetu17g02341	383	FunFam	Thiamine thiazole synthase, chloroplastic	120	355	-	-
	Hetu17g02341	383	Gene3D	-	89	119	-	-
	Hetu17g02341	383	SUPERFAMILY	FAD-NAD(P)-binding domain	84	348	IPR036188	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Hetu17g02341	K03146	cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	283944	Hetu17g02341	Hetu18g02642
	284759	Hetu18g02642	Hetu17g02341
	410519	Hetu17g02341	Hetu31g00880
	410520	Hetu17g02341	Hetu32g00925
	410521	Hetu17g02341	Hetu33g00984

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Hetu	Hetu-Chr17:121696834	Hetu18g02714	Hetu-Chr18:135914936	dispersed
	Hetu	Hetu-Chr16:130496058	Hetu17g02341	Hetu-Chr17:121696834	wgd
	Hetu	Hetu-Chr17:121696834	Hetu18g02642	Hetu-Chr18:129058874	wgd
	Hetu	Hetu-Chr17:121696834	Hetu31g00880	Hetu-Chr31:40049120	wgd
	Hetu	Hetu-Chr17:121696834	Hetu32g00925	Hetu-Chr32:43814125	wgd
	Hetu	Hetu-Chr17:121696834	Hetu33g00984	Hetu-Chr33:42574629	wgd