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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g00869 ATGGCATCAATGACAACAACTTTCACCTCACCACTCTACACCAAAACCCAATCATCCTTCCATGGAGTCCCAGTTGTTAGAATGATCCAACCAGTCAAATCATCCAACAAAACAAACACACCCATTACCATGTCATATGATCTTGGATCATTCACGTTCCAACCCATTAAGGAAGCTATTGTGTCACGTGAGATGACTAGGAGGTACATGACTGACATGATTACTTATGCTGATACTGATGTTGTTGTTGTTGGTGCTGGATCTGCTGGTTTGTCTTGTGCTTATGAGCTTAGCAAAAACCCTAACGTTCAGGTAGCTATCATTGAGCAATCCGTGAGCCCAGGTGGTGGTGCATGGCTAGGTGGACAACTATTCTCAGCAATGGTTGTCCGCAAACCTGCCCACCACTTCCTTGACGAGCTCGAGATCGAGTACGACGAGCAAGAAGACTATGTCGTCATCAAGCATGCCGCTTTGTTCACATCCACAATCATGAGCAAGCTTTTGGCTAGGCCAAATGTCAAGCTCTTCAACGCGGTTGCAGCTGAGGACTTGATCATCAAGGGAGGAAGAGTAGGTGGTGTTGTGACCAACTGGTCTTTGGTCGCACAGAACCACGACACACAATCATGCATGGACCCTAATGTTATGGAGGCTAAGGTTGTTGTCAGCTCGTGTGGCCATGATGGGCCCATGGGCGCTACTGGTGTTAAGAGGCTTAGGAGTGTTGGCTTGATCGAGAGCGTTCCTGGGATGAAGGCTCTCGACATGAACACTGCTGAAGATGCGATTGTGAAGCTGACTAGAGAGATTGTTCCTGGTATGATTGTTACCGGGATGGAAGTTGCTGAGATCGATGGATCTCCCAGGATGGGGCCAACTTTTGGTGCTATGATGATATCAGGACAGAAGGCGGCTCATTTGGCCTTGAAGGCGTTGGGACTCCCAAATGCATTGGATGGAACATTGGTGGGAAGCCTCCACCCAGAGCTTATCCTGGCTGCTGCCGACTCTAGCGAGACTGTTGACGCCTAA 1035 48.7 MASMTTTFTSPLYTKTQSSFHGVPVVRMIQPVKSSNKTNTPITMSYDLGSFTFQPIKEAIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKGGRVGGVVTNWSLVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGLIESVPGMKALDMNTAEDAIVKLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTLVGSLHPELILAAADSSETVDA 344
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g00869 344 FunFam Thiamine thiazole synthase, chloroplastic 78 313 - -
Aann4g00869 344 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 2 322 IPR027495 GO:0009228(InterPro)
Aann4g00869 344 Pfam Thi4 family 62 295 - -
Aann4g00869 344 SUPERFAMILY FAD-NAD(P)-binding domain 42 306 IPR036188 -
Aann4g00869 344 Gene3D - 78 313 IPR036188 -
Aann4g00869 344 PANTHER THIAMINE THIAZOLE SYNTHASE 11 343 - -
Aann4g00869 344 Gene3D - 47 77 - -
Aann4g00869 344 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 58 313 IPR002922 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g00869 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
2456 Aann4g00869 Aann5g00836
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
9462 Aann Aann3g00174 Aann-Chr3:9099866 Aann4g00869 Aann-Chr4:52192582
46058 Aann Aann4g00869 Aann-Chr4:52192582 Aann5g00836 Aann-Chr5:21703989