AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial24g02139 ATGGCTTCCATGACTACAACCTTTGCTTCATCTCTTACCAACAAGACCAAGACATGTTTCTTGGACCAATCATCCTTCCATGGTGTCCCGGTCTCGTCTCCGGTTCGTTTCCAATCGGTTAAAACGAACCGGAACAAGAGCTCGCTGATCACCATGTCGGCCGCACCGTACGATCTCGGGTCCTTCACGTTTCAACCGATCAAGGAAGCGATCGTGTCACGTGAAATGACCCGGAGGTACATGACCGACATGATCACCTATGCTGACACCGACGTTGTTATAGTCGGTGCCGGATCCGCAGGACTTTCCTGCGCTTACGAGCTTAGCAAAAACCCTAATATTCAGGTTGCCATCATCGAGCAATCGGTGAGCCCTGGAGGCGGTGCGTGGCTCGGCGGACAACTATTTTCCGCCATGGTTGTCCGCAAGCCTGCGCACCATTTCCTTGACGAGCTAGAGATCGAGTACGACGAGCAAGAAGACTACGTGGTCATCAAGCACGCGGCTCTATTCACATCAACCATCATGAGCAAGCTTCTGGCGAGACCAAACGTGAAGCTCTTCAACGCGGTTGCAGCGGAGGATTTGATCATTAAAGAAGGGAGAGTAGGCGGTGTGGTGACCAACTGGGCTTTGGTGTCGATGAACCACGACACACAGTCGTGCATGGACCCTAATGTTATGGAGGCTAAGGTTGTTGTGAGCTCGTGTGGTCATGATGGTCCCATGGGTGCCACTGGTGTCAAGAGGCTCAGGAGTGTTGGGATGATTGAAAGTGTTCCTGGGATGAAGGCTCTTGACATGAATACTGCTGAAGACGCGATTGTTAAGCTCACACGAGAGATTGTTCCTGGTATGATCGTTACTGGGATGGAAGTTGCAGAGATCGATGGATCTCCCAGAATGGGGCCAACATTTGGGGCTATGATGATATCTGGACAAAAAGCGGCTCATTTGGCATTGAAGGCACTAGGGCTCCCGAATGCATTGGACGGGACGAGTGTGGGAAGTGTTCAGCCCGAGCTGATCCTTGCGGCTGCGGATTCTGGTGAGACTGTGGACGCCTAA 1068 52.15 MASMTTTFASSLTNKTKTCFLDQSSFHGVPVSSPVRFQSVKTNRNKSSLITMSAAPYDLGSFTFQPIKEAIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNIQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKEGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALDMNTAEDAIVKLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTSVGSVQPELILAAADSGETVDA 355
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial24g02139 355 Pfam Thi4 family 73 306 - -
Bial24g02139 355 Gene3D - 58 88 - -
Bial24g02139 355 Gene3D - 89 334 IPR036188 -
Bial24g02139 355 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 69 324 IPR002922 -
Bial24g02139 355 PANTHER THIAMINE THIAZOLE SYNTHASE 13 354 - -
Bial24g02139 355 FunFam Thiamine thiazole synthase, chloroplastic 89 324 - -
Bial24g02139 355 SUPERFAMILY FAD-NAD(P)-binding domain 55 317 IPR036188 -
Bial24g02139 355 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 6 333 IPR027495 GO:0009228(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial24g02139 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
184655 Bial12g02281 Bial24g02139
189622 Bial4g03157 Bial24g02139
363272 Bial12g02281 Bial24g02139
368926 Bial16g02554 Bial24g02139
374383 Bial24g02139 Bial4g03157
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
689850 Bial Bial16g02554 Bial-Chr16:66137540 Bial24g02139 Bial-Chr24:51957487
794431 Bial Bial12g02281 Bial-Chr12:53110036 Bial24g02139 Bial-Chr24:51957487
842875 Bial Bial24g02139 Bial-Chr24:51957487 Bial4g03157 Bial-Chr4:72274667