AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Laca7g03018 ATGGAGGACATGTTAGTTGCAATCCTTTCGATGCTTCTTATTGTTGCTTTAATTCCACTTTACCTATGGAAACGCCGTCAGGTCCCGCAGTCTCAGGACGAACAAGACGAACCTCGGATTCAGCAAAGGGAAACTGTTGTGCGACCTACTGGTGCTCGTAGCAGGATGCGTAGAAGGAATACTTCTGCAGCAAGCACATCTTCTGCTCCACCACAAGCTGTAGAAGAAACTGAAGATGGAAGTGATGAAGAAGCTGTTGAAGGTGAATATTACAATGCAAAGACATCAAAGAAGAAAGGAAGGAAGAAAGAGGAACGCCAAGCACAACGCCAGGCTGAAGAGGCTGCAAGGGAGTCAAGAAATACAAAACAAGATCGTTACGCAGAGATACGAAGGAGGAAGGATGAAGAACATGAAGCAAGAGAGCGAATGCTGGAAGAGGAAGCTGAGGCCAGAAAGGCGAAAGAGGAGGAAGCTGCAGCCTTAGAGTTTGAGAAATGGAAAGGAGAATTTTCAGTAGATGCTGAAGGTACTACTGAAAATGAAGTTCAAGATGGGACCCAAGGCTTGCTTTTTGATTTTGTGGAGTACATCAAGAAACAGAAATGTGTTCCTTTGGAAGATCTCGCTGCAGAATTCAAACTAAGGACTCAGGACTGTATCAACCGAATCACCTCATTGGAAGACATGGGGAGGTTATCTGGTGTGATGGATGATAGAGGAAAATACATATACATTTCCCATGAAGAAATGAAGGCAGTTGCTGACTATATAAAGCGTGAAGGAAAAGTTAGCATTGCACATCTAGCAAACAAATCAAATCAGTTCATAGATTTGGAACCAAAAACACCTTTATTTGAGGATCTAGCAATTCAGGATGAAATTACAGTTGCTTGA 897 42.92 MEDMLVAILSMLLIVALIPLYLWKRRQVPQSQDEQDEPRIQQRETVVRPTGARSRMRRRNTSAASTSSAPPQAVEETEDGSDEEAVEGEYYNAKTSKKKGRKKEERQAQRQAEEAARESRNTKQDRYAEIRRRKDEEHEARERMLEEEAEARKAKEEEAAALEFEKWKGEFSVDAEGTTENEVQDGTQGLLFDFVEYIKKQKCVPLEDLAAEFKLRTQDCINRITSLEDMGRLSGVMDDRGKYIYISHEEMKAVADYIKREGKVSIAHLANKSNQFIDLEPKTPLFEDLAIQDEITVA 298
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Laca7g03018 298 MobiDBLite consensus disorder prediction 105 154 - -
Laca7g03018 298 MobiDBLite consensus disorder prediction 56 74 - -
Laca7g03018 298 SUPERFAMILY Winged helix DNA-binding domain 185 254 IPR036390 -
Laca7g03018 298 Gene3D - 189 246 IPR036388 -
Laca7g03018 298 PANTHER DDRGK DOMAIN-CONTAINING PROTEIN 1 65 284 IPR050899 -
Laca7g03018 298 MobiDBLite consensus disorder prediction 30 154 - -
Laca7g03018 298 Coils Coil 98 125 - -
Laca7g03018 298 Coils Coil 127 165 - -
Laca7g03018 298 SMART DDRGK-2 93 278 IPR019153 -
Laca7g03018 298 FunFam DDRGK domain-containing protein 1 189 246 - -
Laca7g03018 298 Pfam DDRGK domain 93 278 IPR019153 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Laca7g03018 K23344 DDRGK domain-containing protein 1
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3728959 Laca Laca4g03510 Laca-Chr4:181951334 Laca7g03018 Laca-Chr7:144276332