AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial12g02281 ATGACTACAACCTTTGCCTCATCTCTTACCAACAAGACCAAGACATGTTTCTTGGACCAAACATCCTTCCATGGTGTCCCGGTCTCGTCTCCGGTTCGTTTCCAATCGGTTAAAACGAACCGGAACAAGAGCTCGCTGATCACCATGTCGGCTGCACCGTACGATCTTGGGTCCTTCACGTTTCAACCGATCAAGGAAGCGATCGTGTCACGTGAAATGACCCGGAGGTACATGACCGACATGATCACCTATGCTGACACCGACGTTGTTATAGTCGGTGCCGGATCTGCAGGACTTTCCTGCGCATACGAGCTTAGCAAAAACCCTAACATTCAGGTTGCCATCATCGAGCAATCGGTGAGCCCAGGAGGCGGTGCGTGGCTCGGCGGACAACTATTTTCCGCCATGGTTGTCCGCAAGCCTGCGCACCACTTCCTTGACGAGCTCGAGATTGAGTACGACGAGCAAGAAGACTACGTGGTCATCAAACACGCAGCTCTGTTCACATCAACCATCATGAGCAAGCTTTTGGCGAGACCAAACGTGAAGCTCTTCAACGCGGTTGCCGCGGAGGATTTGATCATTAAAGAAGGGAGAGTAGGTGGTGTTGTGACCAACTGGGCTTTGGTGTCCATGAACCACGACACACAGTCGTGCATGGACCCTAATGTTATGGAGGCTAAGGTGGTTGTGAGCTCGTGTGGTCATGATGGTCCCATGGGTGCCACTGGTGTCAAGAGGCTCAGGAGTGTTGGGATGATTGAAAGTGTTCCTGGAATGAAAGCTCTTGACATGAACACCGCTGAAGATGCGATTGTTAAGCTCACACGAGAGATTGTTCCTGGTATGATCGTTACCGGGATGGAAGTTGCAGAGATCGATGGATCTCCTAGAATGGGACCAACATTTGGGGCTATGATGATATCGGGACAAAAAGCGGCTCATTTGGCATTGAAGGCACTTGGACTCCCGAACGCATTGGATGGGACGAGTGTGGGAAGTGTTCACCCCGAGCTGATCCTTGCGGCTGCGGATTCTGGTGAGACTGTGGACGCCTAA 1059 51.75 MTTTFASSLTNKTKTCFLDQTSFHGVPVSSPVRFQSVKTNRNKSSLITMSAAPYDLGSFTFQPIKEAIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNIQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKEGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALDMNTAEDAIVKLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTSVGSVHPELILAAADSGETVDA 352
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial12g02281 352 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 6 330 IPR027495 GO:0009228(InterPro)
Bial12g02281 352 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 66 321 IPR002922 -
Bial12g02281 352 Gene3D - 55 85 - -
Bial12g02281 352 FunFam Thiamine thiazole synthase, chloroplastic 86 321 - -
Bial12g02281 352 SUPERFAMILY FAD-NAD(P)-binding domain 52 314 IPR036188 -
Bial12g02281 352 PANTHER THIAMINE THIAZOLE SYNTHASE 12 351 - -
Bial12g02281 352 Gene3D - 86 331 IPR036188 -
Bial12g02281 352 Pfam Thi4 family 70 303 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial12g02281 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
184655 Bial12g02281 Bial24g02139
363271 Bial12g02281 Bial16g02554
363272 Bial12g02281 Bial24g02139
363273 Bial12g02281 Bial4g03157
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
677580 Bial Bial12g02281 Bial-Chr12:53110036 Bial16g02554 Bial-Chr16:66137540
794431 Bial Bial12g02281 Bial-Chr12:53110036 Bial24g02139 Bial-Chr24:51957487
797057 Bial Bial12g02281 Bial-Chr12:53110036 Bial4g03157 Bial-Chr4:72274667