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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03707 ATGGTCGTCCGCAAGCCCGCACACCTCTTCCTCGACGAGCTTGAAATCGAGTACGACGAGCAAGAAGACTACGTAGTCATCAAACACGCGGCTCTCTTCACCTCCACCATCATGAGCAAGCTCTTAGCCAGGCCAAACGTGAAGCTCTTCAACGCAGTAGCAGCCGAGGACTTAATCATCAAGGGAGGTAGAGTCAGTGGCGTTGTAACTAACTGGGCTTTAGTCGCAATGAACCACGACACACAATCCTGCATGGACCCGAATGTAATGGAGGCTAAAGTGGTTGTGAGTTCATGTGGACACGATGGACCCATGGGTGCTACAGGAGTGAAAAGGCTCAGAAGCGTTGGATTGATTGAGAGTGTTCCTGGGATGAAGGCTCTTGACATGAACGCTGCTGAAGATGCGATTGTGAAGTTGACTAGAGAGATTGTTCCTGGTATGATTGTTACAGGAATGGAAGTTGCAGAGATCGATGGATCTCCAAGAATGGGGCCGACGTTTGGGGCTATGATGATATCTGGACAGAAGGCTGCTCATCTGGCTTTGAGGGCTTTAGGGCTTCCGAATGCTTTGGATGGGACAAGTGTGGGAAGTGTTCATCCAGAGATGATTCTTGCTGCTGTTGATTCTGGTGAGACTGTGGATGCCTAA 654 49.85 MVVRKPAHLFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKGGRVSGVVTNWALVAMNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGLIESVPGMKALDMNAAEDAIVKLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALRALGLPNALDGTSVGSVHPEMILAAVDSGETVDA 217
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03707 217 Pfam Thi4 family 1 168 - -
Lssa7g03707 217 PANTHER THIAMINE THIAZOLE SYNTHASE 1 216 - -
Lssa7g03707 217 Gene3D - 1 186 IPR036188 -
Lssa7g03707 217 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 1 185 IPR002922 -
Lssa7g03707 217 SUPERFAMILY FAD-NAD(P)-binding domain 4 179 IPR036188 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03707 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
127172 Lssa5g00172 Lssa7g03707
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3967514 Lssa Lssa5g00172 Lssa-Chr5:9848204 Lssa7g03707 Lssa-Chr7:196274400