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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00502 ATGGCTTGTCCCTCACGCGACGATGAGAAAACCCCACCCCAAACCCAAATTAACCCTCTCGATCGCTCTCTGTTTCCCCTAATCTCACAAATCCCTCTTTGTCAATCCCGATTGGCTCCTCTTCCTCTTATTTCTCCAGATTCAGCATCTTGTGTTCAAACCCTAAGGTTTTATAAGATGGATGATATGTTTGTGGCAATCCTTTCAATGCTTCTTCTTGTTGCATTGATTCCGCTTTACCTTTGGAAACGCCGTCAGGTTCCGCAGTCTCGTGATGAACACGAAGAAGAACCTCAGATTCAGCAGAGAGAAGCTGTTGTAAGACCTACCGGTGCTCGGAGTCGGATGCGCAGGAGGCATACTTCAGCTGCCAGCACATCTTCATCTTCTGCTCCACAAACTGTTGAAGAAACTGAGGATGGAAGTGATGAAGAAGCTGTTGAAGGGGAATATTATAATGCAAAAACATCAAAGAAGAAAGGAAGGAAGAAAGAGGAACGCCAAGCACAACGCCAGGCTGACGAGGCTGCAAGGGAGTCGAGAAATACAAAACAGGATCGTTATGCAGAAATGCGCAGGAGGAAAGATGAGGAACACGAAGCAAAAGAACGGATGCTGGAAGAAGAAGCCGAAGCTCGAAAGGCCAAAGAGGAGGAAGCAGCAGCTTTAGAGTTTGATAAATGGAAAGGAGAATTTTCAGTAGATGCTGAAGGTACCACAGAAAATGAAGCTCAAGATGGAACACAGGGTTTGCTTTTTGATTTTGTGGAGTACATTAAGAAACAGAAATGTGTTCCGTTGGAAGATCTTGCTGCAGAATTTAAACTAAGGACTCAAGACTGTATCAATCGAATCACCTCATTGGAAGATATGGGGAGATTGTCAGGTGTGATGGACGATAGAGGAAAATACATATACATCTCACATGAAGAAATGCAGGCAGTTGCAGACTATATCAAGCGCGAAGGTCGGGTCAGCATTGCACATCTAGCAAGCCAGTCAAATCAGTTCATAGATTTGGAACCCAAACCACAGTTTGTGGAGGATTTTGGCACTGCAGATGAGATTACAGTTGCTTGA 1080 44.63 MACPSRDDEKTPPQTQINPLDRSLFPLISQIPLCQSRLAPLPLISPDSASCVQTLRFYKMDDMFVAILSMLLLVALIPLYLWKRRQVPQSRDEHEEEPQIQQREAVVRPTGARSRMRRRHTSAASTSSSSAPQTVEETEDGSDEEAVEGEYYNAKTSKKKGRKKEERQAQRQADEAARESRNTKQDRYAEMRRRKDEEHEAKERMLEEEAEARKAKEEEAAALEFDKWKGEFSVDAEGTTENEAQDGTQGLLFDFVEYIKKQKCVPLEDLAAEFKLRTQDCINRITSLEDMGRLSGVMDDRGKYIYISHEEMQAVADYIKREGRVSIAHLASQSNQFIDLEPKPQFVEDFGTADEITVA 359
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00502 359 Gene3D - 250 307 IPR036388 -
Dapi23g00502 359 MobiDBLite consensus disorder prediction 166 212 - -
Dapi23g00502 359 Pfam DDRGK domain 154 339 IPR019153 -
Dapi23g00502 359 SUPERFAMILY Winged helix DNA-binding domain 246 315 IPR036390 -
Dapi23g00502 359 SMART DDRGK-2 154 339 IPR019153 -
Dapi23g00502 359 Coils Coil 188 226 - -
Dapi23g00502 359 Coils Coil 159 186 - -
Dapi23g00502 359 MobiDBLite consensus disorder prediction 90 212 - -
Dapi23g00502 359 FunFam DDRGK domain-containing protein 1 250 307 - -
Dapi23g00502 359 PANTHER DDRGK DOMAIN-CONTAINING PROTEIN 1 131 351 IPR050899 -
Dapi23g00502 359 MobiDBLite consensus disorder prediction 121 136 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00502 K23344 DDRGK domain-containing protein 1
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Event-related genes

Select Gene_1 Gene_2 Event_name
251742 Dapi7g00484 Dapi23g00502
387135 Dapi23g00502 Dapi7g00484
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2035316 Dapi Dapi23g00502 Dapi-Chr23:11279793 Dapi7g00484 Dapi-Chr7:10671245