AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00846 ATGGTGTCTACTGCTAAGATCAAATCCGTTGATTTCTACAGGAAAATACCAAGAGATTTGACAGAGGCGTCACTGTCAGGTGCCAGCTTGTCTATCGTGGCCGCTCTTTCCATGATGTTTTTATTTGGAATGGAACTACATAATTATCTGAGTATCAGTACATCAACTTCTGTCATAGTTGACAGAAGTTCTGATGAGGATTACTTACGGATTGATTTCAATATTAGTTTTCCAGCCTTATCCTGTGAGTTTGCATCTGTGGACGTGAGTGATGTACTGGGAACTAACAGGTTGAACATAACCAAAACAGTCCGCAAATATTCAATTAATAAGCATCTACAAACTACTGGCTCTGAGTTTGACTCTGGATCAGTTGGTCATGTAGTCAAGCATGGTGATGAGGCTGACGAGGATTATGGTGAAGGATCCTTAACTCTAAATTCACGTAACTTTGATAGGGTTTCTCATCAGCATTCAATTGTGGTTGTAAATTTCTATGCTCCTTGGTGCTATTGGAGTAACCGTCTGAAACCTTCATGGGAGAAGGCAGCCAAAATTATAAGAGAAAGGCATGATCCAGAAATTGATGGTCGTATTATTATGGGAAAGGTGGACTGTACTGAAGAAGTTGATCTGTGTAGAAGTCACCACATACAGGGTTATCCATCTATTCGCATATTCCGCAAGGGCAGTGATGTCAGGGATGAGCATGGGCACCACGAGCATGAGTCATATTATGGTGACCGTGATACAGAAACCTTGGTAGATACTATGGAAAAATTGGTTGCACCTATTGCGGTGGAATCCAATCTGGCCTTGGAGGATAAATCTGGCACAGCTACAGAGACTGCTAAAAGACCTGCACCGCGTGAAGCAGGATGTAGAATCGAAGGGTTTGTTCGAGTCAAGAAGGTTCCTGGTAATCTTGTAATTGCGGCCCGTTCTGCAGCCCACTCCTTTGATGCTTCCCGGATGAACATGTCGCATGTAATTTCTTCATTTTCTTTTGGTAAGAAGATCACTCCGAGGGCGATGAGTGATATTAAGCGAATACTACCTTACATTGGCGTAAGCCATGACAAGTTGAATGGCAAGACATATCTCACTGACCCAGACGATCATGCAAATGTTACAGTAGAGCATTATCTTCAAGTTGTAAAGACTGAGGTAATGAGGTCATCTCATCAACTGATTGAGGATTACGAGTATACAGCACATAGTAGCTTGGTACATGCTTATTCGATCCCTGTTGTGAAGTTCCATTATGAGCCATCCCCAATGCAGGTCTTAGTTACAGAAAATCCCAAATCATTTTCTCATTTCATCACCAACGTCTGTGCTATTATCGGTGGTGTTTTCACGGTTGCTGGGATACTGGATTCGATTCTGCACAATACATTGAGACTAGTGAAAAAAGTTGAACTAGGGAAGAACTTTTAG 1440 42.01 MVSTAKIKSVDFYRKIPRDLTEASLSGASLSIVAALSMMFLFGMELHNYLSISTSTSVIVDRSSDEDYLRIDFNISFPALSCEFASVDVSDVLGTNRLNITKTVRKYSINKHLQTTGSEFDSGSVGHVVKHGDEADEDYGEGSLTLNSRNFDRVSHQHSIVVVNFYAPWCYWSNRLKPSWEKAAKIIRERHDPEIDGRIIMGKVDCTEEVDLCRSHHIQGYPSIRIFRKGSDVRDEHGHHEHESYYGDRDTETLVDTMEKLVAPIAVESNLALEDKSGTATETAKRPAPREAGCRIEGFVRVKKVPGNLVIAARSAAHSFDASRMNMSHVISSFSFGKKITPRAMSDIKRILPYIGVSHDKLNGKTYLTDPDDHANVTVEHYLQVVKTEVMRSSHQLIEDYEYTAHSSLVHAYSIPVVKFHYEPSPMQVLVTENPKSFSHFITNVCAIIGGVFTVAGILDSILHNTLRLVKKVELGKNF 479
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00846 479 Pfam Endoplasmic reticulum vesicle transporter 288 460 IPR012936 -
Chna2g00846 479 Gene3D Glutaredoxin 131 289 - -
Chna2g00846 479 SUPERFAMILY Thioredoxin-like 138 261 IPR036249 -
Chna2g00846 479 CDD PDI-a-family 144 258 - -
Chna2g00846 479 FunFam Protein disulfide-isomerase 5-4 131 286 - -
Chna2g00846 479 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 7 97 IPR039542 -
Chna2g00846 479 ProSiteProfiles Thioredoxin domain profile. 114 263 IPR013766 -
Chna2g00846 479 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 1 473 IPR045888 GO:0005783(PANTHER)|GO:0030134(PANTHER)
Chna2g00846 479 Pfam Thioredoxin 145 243 IPR013766 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00846 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
58655 Chna2g00846 Chna5g00542
58656 Chna2g00846 Chna6g03801
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1587793 Chna Chna2g00846 Chna-Chr2:65362335 Chna4g03611 Chna-Chr4:281108758
1621949 Chna Chna2g01254 Chna-Chr2:103418793 Chna2g00846 Chna-Chr2:65362335
1628987 Chna Chna8g01898 Chna-Chr8:157137770 Chna2g00846 Chna-Chr2:65362335
1632194 Chna Chna2g00846 Chna-Chr2:65362335 Chna5g00542 Chna-Chr5:27896569
1632358 Chna Chna2g00846 Chna-Chr2:65362335 Chna6g03801 Chna-Chr6:325422272