AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g20900 ATGGCATCCATGGCTACAACCTTCGCCTCAAAAACCTCCTTCATCGACCGTTCATCCTTCCATGGCGTCCCGATCTCATCGCCGACACGAATCCAATCAATCAAATCAAACCAAAACAAGACCACACCGATCACCATGTCCGCTACACCTTACGATCTCGGATCCTTCACGTTTCAACCCATCAAAGAAGCGATCGTATCGCGTGAGATGACAAGGAGGTACATGACTGATATGATCACGTACGCTGATACTGATGTGGTTGTTGTTGGTGCTGGATCTGCTGGTCTCTCCTGTGCTTATGAACTTAGCAAAAACCCTAACGTTCAGGTAGCTATCATCGAGCAATCTGTGAGCCCTGGTGGTGGAGCATGGCTCGGTGGACAACTATTCTCAGCGATGGTTGTCCGCAAGCCAGCCCACCACTTCCTTGACGAGCTTGAGATCGAGTACGACGAGCAAGAAGACTACGTCGTCATCAAGCACGCGGCTCTGTTCACCTCCACGATCATGAGCAAGCTTTTGGCTAGGCCAAATGTGAAGCTCTTTAATGCGGTTGCAGCTGAGGACTTGATCATCAAGGGTGACAGAGTAGCTGGTGTTGTGACCAACTGGGCTTTGGTCACAATGAACCACGACACACAATCGTGCATGGACCCTAATGTTATGGAGTCTAAGGTGGTTGTGAGCTCATGCGGCCATGATGGTCCCATGGGTGCTACTGGCGTCAAGCGGCTCAGGAGCGTCGGGTTGATCGAGAGCGTTCCTGGGATGAAAGCTCTTGACATGAACGCTGCTGAAGATGCGATTGTTAAGCTGACCAGAGAGATTGTTCCTGGTATGATTGTCACCGGCATGGAAGTTGCTGAGATAGATGGATCTCCAAGAATGGGGCCAACTTTTGGGGCTATGATGATATCTGGGCAGAAGGCGGCTCATTTAGCGTTGAAGGCGTTGGGGCTTCCGAATGCATTGGATGGAACACTTGTGGGAAGCTTGCACCCAGAGCTGATCCTTGCTGCAGCTGATGCTGGTGAGACTGTGGATGCCTAA 1050 51.05 MASMATTFASKTSFIDRSSFHGVPISSPTRIQSIKSNQNKTTPITMSATPYDLGSFTFQPIKEAIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKGDRVAGVVTNWALVTMNHDTQSCMDPNVMESKVVVSSCGHDGPMGATGVKRLRSVGLIESVPGMKALDMNAAEDAIVKLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTLVGSLHPELILAAADAGETVDA 349
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g20900 349 FunFam Thiamine thiazole synthase, chloroplastic 83 318 - -
Pslu1g20900 349 SUPERFAMILY FAD-NAD(P)-binding domain 46 311 IPR036188 -
Pslu1g20900 349 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 2 327 IPR027495 GO:0009228(InterPro)
Pslu1g20900 349 PANTHER THIAMINE THIAZOLE SYNTHASE 4 348 - -
Pslu1g20900 349 Pfam Thi4 family 67 300 - -
Pslu1g20900 349 PRINTS Adrenodoxin reductase family signature 109 122 - -
Pslu1g20900 349 PRINTS Adrenodoxin reductase family signature 253 266 - -
Pslu1g20900 349 PRINTS Adrenodoxin reductase family signature 85 107 - -
Pslu1g20900 349 Gene3D - 83 318 IPR036188 -
Pslu1g20900 349 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 63 318 IPR002922 -
Pslu1g20900 349 Gene3D - 52 82 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g20900 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
134863 Pslu1g20900 Pslu2g00619
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4513947 Pslu Pslu1g20900 Pslu-Chr1:150523687 Pslu2g00619 Pslu-Chr2:3982176