AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02554 ATGGCATCCATGGCTACCACCACTTTTGCCAAGACATGTTTCTTGGACCAAACATCATTCTATGGTGTTCCGGTTTCGTCCCCTGTCCGGTTCCAGCCAGTTAAATCTGGCCAGAACCGGAACATGCCGATTTCCATGTCGGCTGCTCCGTACGATCTGGGATCGTTCACGTTTCAGCCGATCAAGGAATCGATCGTGTCACGTGAAATGACTAGAAGGTACATGACTGATATGATCACGTATGCCGATACTGATGTTGTTGTTGTTGGTGCTGGATCCGCTGGTTTGTCGTGTGCGTATGAGCTTAGCAAAAACCCTAACGTTCAGGTTGCCATCATCGAGCAATCTGTGAGCCCTGGTGGTGGAGCATGGCTAGGAGGACAACTGTTCTCCGCCATGGTTGTTCGCAAACCAGCCCACCACTTCCTTGATGAGCTCGAGATCGAGTATGACGAGCAAGAAGACTACGTTGTCATCAAACACGCCGCTCTATTCACCTCCACCATCATGAGCAAGCTTTTGGCTAGACCAAATGTTAAGCTCTTTAACGCGGTTGCAGCCGAGGACTTAATCATCAAGGGAGGAAGAGTAGGTGGTGTTGTGACCAATTGGGCTTTGGTGTCAATGAACCATGACACACAATCCTGCATGGACCCTAATGTCATGGAGGCTAAGGTGGTTGTGAGCTCGTGTGGTCACGATGGTCCGATGGGTGCCACCGGAGTGAAGAGACTGAGGAGCGTTGGGATGATCGAGAGTGTTCCTGGGATGAAAGCTCTCGATATGAATACCGCTGAGGATGAAATTGTGAAGATGACTAGAGAGGTGGTTCCCGGCATGATTGTTACTGGAATGGAAGTTGCAGAGATTGATGGATCTCCGAGAATGGGGCCAACTTTTGGGGCTATGATGATATCTGGACAGAAGGCTGCCCATTTGGCATTGAAGGCTTTGGGGCTACCGAATGCGTTGGACGGGACCAGCGTCGGGACCATTCAACCGGAGTTGATTCTGGCTGCTGCGGATTCCGCTGAGACTGTGGATGCCTAG 1050 50.86 MASMATTTFAKTCFLDQTSFYGVPVSSPVRFQPVKSGQNRNMPISMSAAPYDLGSFTFQPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALDMNTAEDEIVKMTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTSVGTIQPELILAAADSAETVDA 349
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02554 349 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 63 318 IPR002922 -
Bial16g02554 349 SUPERFAMILY FAD-NAD(P)-binding domain 42 311 IPR036188 -
Bial16g02554 349 Gene3D - 52 82 - -
Bial16g02554 349 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 2 327 IPR027495 GO:0009228(InterPro)
Bial16g02554 349 Pfam Thi4 family 67 300 - -
Bial16g02554 349 Gene3D - 83 318 IPR036188 -
Bial16g02554 349 PANTHER THIAMINE THIAZOLE SYNTHASE 18 348 - -
Bial16g02554 349 FunFam Thiamine thiazole synthase, chloroplastic 83 318 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02554 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
189248 Bial4g03157 Bial16g02554
363271 Bial12g02281 Bial16g02554
368926 Bial16g02554 Bial24g02139
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
677580 Bial Bial12g02281 Bial-Chr12:53110036 Bial16g02554 Bial-Chr16:66137540
689850 Bial Bial16g02554 Bial-Chr16:66137540 Bial24g02139 Bial-Chr24:51957487
814235 Bial Bial16g02554 Bial-Chr16:66137540 Bial4g03157 Bial-Chr4:72274667