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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02141 ATGGTTGGAGGTTCTGGCGATTGGAGTCTTAAATCAACTGCCTATAACCAATGGGCGGAAAAAAGCCGTTTTCAAATTGGAGACACTGTTTTATTTAATTATCAAGCTGGGAAGGACTCAGTTGTTGAAGTAAGTAAAGAAGATTACGACAACTGCAACTCGGCATCACCCATTGCAAAATACACTGATGGTCACTCCGAAGTCAAGTTGGAAAAATCTGGGCCTCATTATTTCATTAGCGGACTTGTGGAAAACTGTAAAAACAACGAGAAGATTGTGATTGTTGTCTTGGCAGATAGAAGCCAGTCACCTCCAAGCTCACCTCCTTCACCAGCTCCGGCAGGAGAAGAGTCTCCCTCTCCTCCTCCGGCACCTGCCACAGAAGATTATAACCCAACTTCAGCTCCAAGTGACGCGTCCTCAGTTGTCACAAGTTTCATTTACTCAATTGTTGCTTTTGGTGGCTCTTCGCTTCTGTTTGTGTTTTGA 489 44.38 MVGGSGDWSLKSTAYNQWAEKSRFQIGDTVLFNYQAGKDSVVEVSKEDYDNCNSASPIAKYTDGHSEVKLEKSGPHYFISGLVENCKNNEKIVIVVLADRSQSPPSSPPSPAPAGEESPSPPPAPATEDYNPTSAPSDASSVVTSFIYSIVAFGGSSLLFVF 162
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02141 162 CDD OsENODL1-like 2 97 IPR041846 -
Cind3g02141 162 MobiDBLite consensus disorder prediction 104 129 - -
Cind3g02141 162 ProSiteProfiles Phytocyanin domain profile. 1 98 IPR003245 GO:0009055(InterPro)
Cind3g02141 162 Gene3D - 1 108 IPR008972 -
Cind3g02141 162 PANTHER BLUE COPPER PROTEIN 2 113 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cind3g02141 162 SUPERFAMILY Cupredoxins 1 97 IPR008972 -
Cind3g02141 162 MobiDBLite consensus disorder prediction 98 139 - -
Cind3g02141 162 FunFam Cupredoxin superfamily protein 1 102 - -
Cind3g02141 162 Pfam Plastocyanin-like domain 8 88 IPR003245 GO:0009055(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02141 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
67195 Cind1g01779 Cind3g02141
67801 Cind2g06148 Cind3g02141
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1729767 Cind Cind3g02141 Cind-Chr3:316339782 Cind9g04491 Cind-Chr9:207261447
1778254 Cind Cind1g01779 Cind-Chr1:372433992 Cind3g02141 Cind-Chr3:316339782
1779282 Cind Cind2g06148 Cind-Chr2:338093850 Cind3g02141 Cind-Chr3:316339782
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cind1g01779 ACH 9 186 PhytocyaNIN gene family AT3G20570 45.503 9.60e-46 149.0
Cind1g02259 . 1 152 PhytocyaNIN gene family AT5G15350 39.474 2.79e-38 127.0
Cind1g05523 . 3 321 PhytocyaNIN gene family AT4G27520 39.759 1.31e-48 173.0
Cind2g06148 ACH 7 178 PhytocyaNIN gene family AT3G20570 40.462 1.14e-39 139.0
Cind3g02141 ACH 32 188 PhytocyaNIN gene family AT3G20570 45.86 1.80e-43 141.0
Cind3g05665 ACH 1 180 PhytocyaNIN gene family AT5G53870 44.199 5.01e-42 149.0
Cind4g01344 . 2 168 PhytocyaNIN gene family AT5G15350 48.503 1.49e-56 174.0
Cind4g01345 . 3 139 PhytocyaNIN gene family AT2G27035 41.429 3.48e-37 124.0
Cind4g03094 . 5 127 PhytocyaNIN gene family AT3G18590 52.033 1.09e-41 136.0
Cind4g04365 . 9 146 PhytocyaNIN gene family AT1G79800 42.754 2.06e-38 129.0
Cind5g00623 . 33 116 PhytocyaNIN gene family AT1G64640 62.791 3.56e-33 124.0
Cind5g00641 . 33 160 PhytocyaNIN gene family AT1G64640 56.296 1.01e-44 156.0
Cind6g04056 . 12 179 PhytocyaNIN gene family AT1G08500 40.0 1.39e-37 128.0
Cind6g04227 . 41 136 PhytocyaNIN gene family AT1G17800 40.625 8.02e-21 80.1
Cind7g03539 . 10 201 PhytocyaNIN gene family AT1G08500 56.477 3.43e-69 210.0
Cind7g04661 . 10 201 PhytocyaNIN gene family AT1G08500 57.292 3.20e-70 212.0
Cind8g01083 . 32 132 PhytocyaNIN gene family AT1G79800 46.535 3.04e-29 114.0
Cind8g02953 . 63 158 PhytocyaNIN gene family AT1G08500 51.042 1.14e-27 99.4
Cind9g01225 . 54 198 PhytocyaNIN gene family AT4G28365 42.177 1.54e-31 110.0
Cind9g04491 . 15 177 PhytocyaNIN gene family AT4G28365 46.988 1.47e-46 150.0