Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi1g00417	ATGGTTTCGTCTGCTAAAATTAAATCCGTTGATTTTTACAGGAAAATTCCAAGAGATTTGACAGAGGCGTCACTGTCAGGTGCTGGCTTGTCGATCATAGCAGCTCTTTCCATGATGTTTTTATTTGGAATGGAATTACATAATTATTTGAGTATCAGTACCTCGACTGCTGTCATAGTTGACAGAAGTCCTGATGAGGATTACTTACGGATTGATTTTAATATGAGTTTTCCGGCTTTATCATGTGAGTTTGCATCCGTGGACATGAGTGATGTACTGGGAACTAACAGGTTGAATATTACAAAAACAGTCCGCAAATATTCAATCAATAAACATCTACAAACTACTGGTTCCGAGTTTGACTCTGGACCAGTTACTCATATTGTTAAACATGATGACGAAAATGACGAGGAATATGGTGAAGGATCTGTTACTCTAAATGAACGTAATTTTCATAGGATTTCTCATCAGTATTCAATTTTGGTTGTTAATTTTTATGCTCCTTGGTGCTATTGGAGTAACCGTCTGAAACCCTCATGGGAGAAGGCAGCCAAAATTATAAGAGAAAGACATGATCCGGAAGTGGATGGCCTTATCATCATGGGGAAGGTGGACTGTACTGAAGAAGTTGATCTGTGTAGAAGTCACCACATACAAGGTTATCCATCTATTCGCATATTCCGTAAGGGCAGTGATGTTAAGGATGAGCATGGGCACCACGAGCATGAATCATATTATGGTGACCGAGATACAGATACCTTGGTGGATACGATGGAGCAATTGGTTGCACCAATTGCATTGGAGTCATCAAAGCTGTCCTTGGAGGATAAATCTGACACGAGTACAGAGAATGCAAAAAGACCTGCACCTCGTGAAGCAGGATGTAGAATTGAAGGGTTTGTACGAGTCAAGAAGGTTCCTGGTAATCTTGTAATCTCAGCCCGTTCTGGGGCCCACTCCTTTGATGCTTCCCTGATGAACATGTCACATGTAATATCTTCTTTTTCCTTTGGTAAGAAGATCACTCCAAGGGTGATGAGTGATATTAAGCAAATACTACCTTACATTGGCGTAAGCCATGACAAATTGACTGGAAAGGCATATCTCACCGACCCAGAAGATCATGCAAATGTTACTGTAGAGCATTATCTTCAAGTTGTGAAGACTGAGGTAATGCGAGCATCTCATCAATTGATTGAGGATTACGAGTACACAGCCCATAGTAGCTTGATACATGCGTACTCAGTCCCTGTTGTGAAGTTTCATTACGAGCCATCACCAATGCAGGTACTGATAACAGAAAATCCCAAATCATTTTCACATTTCATCACCAATGTCTGTGCCATTATCGGTGGTGTTTTCACGGTTGCTGGGATACTAGATTCAGTTCTGCACAACACATTGAGACTTGTGAAAAAAGTTGAATTGGGGAAAAACTTTTAG	1443	40.61	MVSSAKIKSVDFYRKIPRDLTEASLSGAGLSIIAALSMMFLFGMELHNYLSISTSTAVIVDRSPDEDYLRIDFNMSFPALSCEFASVDMSDVLGTNRLNITKTVRKYSINKHLQTTGSEFDSGPVTHIVKHDDENDEEYGEGSVTLNERNFHRISHQYSILVVNFYAPWCYWSNRLKPSWEKAAKIIRERHDPEVDGLIIMGKVDCTEEVDLCRSHHIQGYPSIRIFRKGSDVKDEHGHHEHESYYGDRDTDTLVDTMEQLVAPIALESSKLSLEDKSDTSTENAKRPAPREAGCRIEGFVRVKKVPGNLVISARSGAHSFDASLMNMSHVISSFSFGKKITPRVMSDIKQILPYIGVSHDKLTGKAYLTDPEDHANVTVEHYLQVVKTEVMRASHQLIEDYEYTAHSSLIHAYSVPVVKFHYEPSPMQVLITENPKSFSHFITNVCAIIGGVFTVAGILDSVLHNTLRLVKKVELGKNF	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi1g00417	480	Gene3D	Glutaredoxin	128	291	-	-
	Lomi1g00417	480	CDD	PDI-a-family	144	258	-	-
	Lomi1g00417	480	FunFam	Protein disulfide-isomerase 5-4	131	287	-	-
	Lomi1g00417	480	Pfam	Thioredoxin	144	243	IPR013766	-
	Lomi1g00417	480	PANTHER	ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN	1	474	IPR045888	GO:0005783(PANTHER)\|GO:0030134(PANTHER)
	Lomi1g00417	480	Pfam	Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)	7	97	IPR039542	-
	Lomi1g00417	480	SUPERFAMILY	Thioredoxin-like	140	261	IPR036249	-
	Lomi1g00417	480	ProSiteProfiles	Thioredoxin domain profile.	114	263	IPR013766	-
	Lomi1g00417	480	Pfam	Endoplasmic reticulum vesicle transporter	289	461	IPR012936	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi1g00417	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	121262	Lomi1g00417	Lomi5g01992
	324144	Lomi2g04238	Lomi1g00417
	333333	Lomi1g00417	Lomi2g04238

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	3821799	Lomi	Lomi1g00417	Lomi-Chr1:3776844	Lomi1g00552	Lomi-Chr1:5265366
	3854296	Lomi	Lomi1g00417	Lomi-Chr1:3776844	Lomi2g04238	Lomi-Chr2:47803312
	3856932	Lomi	Lomi1g00417	Lomi-Chr1:3776844	Lomi5g01992	Lomi-Chr5:30987454