AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr02g04181 ATGGCATCCATGACTACCACCTTCACCTCATCTTTCTCCAACAAAACATGTTTTTTGGATCAATCATCCTTCCATGGTGTTCCCATCACTTCCCCGGTCCGGATCCAACCCGTTAAATCGAACCAAAGCAAGAACATGCCCATCACCATGTCTTACGACCTCGGTTCATTCACCTTTCAACCCATCAAGGAGGCGATCGTGTCCCGTGAAATGACCAGGAGGTACATGACTGACATGATCACCTATGCCGATACCGACGTTGTTGTCGTTGGTGCTGGCTCTGCTGGTCTCTCATGTGCTTACGAGCTTAGCAAAAATCCTAACGTTCAGGTAGCTATCATCGAGCAATCTGTGAGCCCTGGAGGAGGAGCATGGCTCGGAGGACAGCTGTTTTCAGCCATGGTGGTCCGCAAACCCGCACACCACTTCCTGGACGAGCTCGAGATCGAGTACGATGAGCAAGAAGACTACGTGGTCATCAAACACGCCGCTCTCTTCACATCCACCATCATGAGCAAGCTTTTGGCCAGACCAAACGTGAAGCTCTTCAACGCGGTTGCAGCCGAGGATTTGATCATAAAGGAAGGGAGAGTAGGTGGTGTTGTGACCAACTGGGCTTTGGTGTCCATGAACCATGACACGCAGTCATGCATGGACCCTAATGTGATGGAGGCTAAGGTGGTTGTGAGCTCATGTGGTCATGATGGTCCCATGGGTGCTACGGGGGTCAAGCGGCTCAGGAGCGTTGGAATGATCGAAAGCGTTCCTGGGATGAAGGCGCTCGACATGAACACTGCTGAGGACGCCATCGTGAAGCTTACCAGAGAGATTGTCCCTGGTATGATTGTTACTGGAATGGAAGTTGCTGAGATTGATGGATCTCCCAGAATGGGACCAACATTTGGAGCTATGATGATATCCGGACAGAAAGCGGCTCATTTGGCATTGAAGGCACTTGGGCTGCCGAATGCATTGGACGGAACAAGTGTGGGAAGTGTTCACCCTGAGCTGATCCTTGCAGCTGCTGATTCTAGTGAGACCGCCGATGCCTAA 1053 51.38 MASMTTTFTSSFSNKTCFLDQSSFHGVPITSPVRIQPVKSNQSKNMPITMSYDLGSFTFQPIKEAIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKEGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALDMNTAEDAIVKLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTSVGSVHPELILAAADSSETADA 350
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr02g04181 350 Gene3D - 84 329 IPR036188 -
Amtr02g04181 350 PANTHER THIAMINE THIAZOLE SYNTHASE 13 349 - -
Amtr02g04181 350 FunFam Thiamine thiazole synthase, chloroplastic 84 319 - -
Amtr02g04181 350 Gene3D - 53 83 - -
Amtr02g04181 350 SUPERFAMILY FAD-NAD(P)-binding domain 48 312 IPR036188 -
Amtr02g04181 350 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 5 328 IPR027495 GO:0009228(InterPro)
Amtr02g04181 350 Pfam Thi4 family 68 301 - -
Amtr02g04181 350 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 64 319 IPR002922 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr02g04181 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
359047 Amtr02g04181 Amtr02g06651
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
298056 Amtr Amtr02g04181 Amtr-Chr2:82798534 Amtr02g06651 Amtr-Chr2:120130141