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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi1g00416 ATGCTTTGCACTGACTCTCAAGAAATCTCATTACAATCAAAACCTGTACAAATACCCGACTCATTTGTTAGATACTTACCTACAAGTTCTTCAACAATTCCAATGGCAAAGTCGGTACTTGTTGCCGGGCTTTTATGTGTTTTATTGTTGATACCCAACAGTGATGCATATGAGTTCATGGTTGGAGGTTCTGGTGATTGGAGTCTTGCATCAACCTCCTATAATCAATGGGCAGAAAAAAGTCGTTTTCAAATCGGGGACACTGTTTTGTTTAAGTACCAAGCGGGGAAGGACTCGGTGGTTCAAGTAAGCAAAGAAGATTACAACAATTGCAACGCAGCATCACCCATTGCAAAGTATAGTGAAGGTCATTCGGTGGTAACTTTGACCCAATCTGGGCCTCATTATTTCATTAGTGGACTAGTGGAGAATTGTAAAAACAACGAGAAGATCGTGATTGTTGTCATGGCAGATAGAAGCCATCGATCACCTCCAAGCTCTCCTCCTTCTCCAGCTCCGGCAGGTGAAGAGTCTCCATCTCCTCCTCCAGCAAGCGAAGAATCTCCATCTCCACCACCTGCTCCAGCAACAGAAGATAATAACCCGACTCCAGCCCCAAATGCAGCGTCTTCAATTGTCACAAGTTTCGCTTACTCTATTGTTGCTTTTGCTGGCTCTTCACTTCTCTTTGTCTTTTAA 699 43.49 MLCTDSQEISLQSKPVQIPDSFVRYLPTSSSTIPMAKSVLVAGLLCVLLLIPNSDAYEFMVGGSGDWSLASTSYNQWAEKSRFQIGDTVLFKYQAGKDSVVQVSKEDYNNCNAASPIAKYSEGHSVVTLTQSGPHYFISGLVENCKNNEKIVIVVMADRSHRSPPSSPPSPAPAGEESPSPPPASEESPSPPPAPATEDNNPTPAPNAASSIVTSFAYSIVAFAGSSLLFVF 232
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi1g00416 232 MobiDBLite consensus disorder prediction 164 200 - -
Lomi1g00416 232 Pfam Plastocyanin-like domain 67 147 IPR003245 GO:0009055(InterPro)
Lomi1g00416 232 SUPERFAMILY Cupredoxins 56 156 IPR008972 -
Lomi1g00416 232 CDD OsENODL1-like 57 156 IPR041846 -
Lomi1g00416 232 Gene3D - 57 166 IPR008972 -
Lomi1g00416 232 ProSiteProfiles Phytocyanin domain profile. 57 157 IPR003245 GO:0009055(InterPro)
Lomi1g00416 232 PANTHER BLUE COPPER PROTEIN 49 177 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Lomi1g00416 232 MobiDBLite consensus disorder prediction 158 208 - -
Lomi1g00416 232 FunFam Early nodulin-like protein 1 56 160 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi1g00416 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
118680 Lomi11g01876 Lomi1g00416
121260 Lomi1g00416 Lomi5g01993
121261 Lomi1g00416 Lomi7g00269
324143 Lomi2g04239 Lomi1g00416
333334 Lomi1g00416 Lomi2g04239
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3821798 Lomi Lomi1g00416 Lomi-Chr1:3775734 Lomi6g02025 Lomi-Chr6:28474090
3849639 Lomi Lomi1g00416 Lomi-Chr1:3775734 Lomi11g01876 Lomi-Chr11:27146632
3854295 Lomi Lomi1g00416 Lomi-Chr1:3775734 Lomi2g04239 Lomi-Chr2:47809836
3856931 Lomi Lomi1g00416 Lomi-Chr1:3775734 Lomi5g01993 Lomi-Chr5:30991470
3858340 Lomi Lomi1g00416 Lomi-Chr1:3775734 Lomi7g00269 Lomi-Chr7:2625113
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lomi1g00352 ACH 7 150 PhytocyaNIN gene family AT4G27520 54.483 1.32e-48 160.0
Lomi1g00416 ACH,LST 6 188 PhytocyaNIN gene family AT3G20570 46.995 9.57e-53 167.0
Lomi1g00582 LST 1 136 PhytocyaNIN gene family AT1G17800 38.686 2.57e-21 81.3
Lomi2g03599 . 13 128 PhytocyaNIN gene family AT3G20570 29.032 2.34e-17 72.8
Lomi2g04029 LST 1 136 PhytocyaNIN gene family AT1G17800 37.226 5.28e-20 78.2
Lomi2g04239 ACH,LST 14 202 PhytocyaNIN gene family AT3G20570 46.907 2.18e-53 167.0
Lomi3g00283 LST 8 170 PhytocyaNIN gene family AT4G31840 41.52 4.06e-42 137.0
Lomi3g00597 . 15 149 PhytocyaNIN gene family AT1G79800 40.876 2.44e-35 121.0
Lomi4g02976 LST 8 170 PhytocyaNIN gene family AT4G31840 40.351 6.33e-42 137.0
Lomi5g01573 LST 33 191 PhytocyaNIN gene family AT1G64640 53.846 2.10e-50 159.0
Lomi5g01993 ACH,LST 9 202 PhytocyaNIN gene family AT3G20570 45.455 3.14e-48 154.0
Lomi5g02065 ACH 3 199 PhytocyaNIN gene family AT5G53870 48.544 1.44e-52 172.0
Lomi6g02025 . 26 190 PhytocyaNIN gene family AT4G28365 46.988 5.75e-45 146.0
Lomi7g00269 ACH 14 178 PhytocyaNIN gene family AT3G20570 44.848 1.75e-41 137.0
Lomi8g01648 LST 12 153 PhytocyaNIN gene family AT1G08500 43.75 2.10e-33 117.0
Lomi9g00519 LST 5 127 PhytocyaNIN gene family AT3G18590 50.407 5.25e-43 139.0
Lomi9g01286 . 8 162 PhytocyaNIN gene family AT2G27035 37.58 1.63e-37 125.0
Lomi9g01287 LST 10 168 PhytocyaNIN gene family AT5G15350 50.932 1.20e-55 171.0
Lomi10g01994 LST 12 153 PhytocyaNIN gene family AT1G08500 43.75 1.67e-34 120.0
Lomi10g02560 . 11 201 PhytocyaNIN gene family AT1G08500 53.731 6.68e-67 204.0
Lomi11g00162 . 11 159 PhytocyaNIN gene family AT5G15350 38.411 7.52e-37 123.0
Lomi11g01512 LST 33 191 PhytocyaNIN gene family AT1G64640 52.663 1.56e-48 154.0
Lomi11g01876 ACH,LST 9 178 PhytocyaNIN gene family AT3G20570 52.299 5.12e-51 162.0
Lomi12g00878 LST 10 168 PhytocyaNIN gene family AT5G15350 51.553 3.74e-56 172.0
Lomi12g01703 LST 1 129 PhytocyaNIN gene family AT1G48940 51.538 1.02e-43 141.0