AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu16g02483 ATGGCTTCCATGACTACCACCACCTTCACCTCATCTCTCTCCAACAAGACCTCCTATCAATCATCCTTCCATGGGGTTTTTCCTATGCGGATCCAATCCCTCGTCGTTAAATCAAACAAAAACAACAACAACACGCCTATCACCATGTCTTACGACCTCGGTCAATTCACCTTTCAACCCATCAAGGAGGCCATCGTGTCTCGTGAAATGACCAGGAGGTACATGACTGATATGATCACCTACGCCGATACGGATGTTGTCGTCGTTGGTGCTGGTTCCGCTGGTCTCTCCTGCGCTTACGAGCTTAGCAAGAACCCTAACGTTCAGGTAGCCATCATCGAGCAATCTGTGAGCCCTGGTGGCGGAGCATGGCTGGGAGGACAACTCTTCTCCGCCATGGTTGTCCGCAAACCCGCACACCACTTCCTTGACGAGCTTGAGATCGAGTACGACGAGCAAGAAGACTACGTGGTCATCAAACACGCGGCTCTGTTCACATCGACCATCATGAGCAAGCTTTTGGCAAGGCCAAACGTGAAGCTCTTCAATGCGGTTGCTGCGGAGGATTTGATCATCAAGGAAGGGAGAGTTGGTGGCGTTGTAACCAACTGGGCTTTGGTGTCGATGAACCATGACACACAGTCATGCATGGACCCTAACGTCATGGAGGCTAAGGTGGTTGTCAGCTCATGTGGTCATGATGGTCCCATGGGTGCCACCGGGGTCAAGCGCCTCAGGAGCGTTGGGATGATTGAAAGCGTTCCCGGGATGAAAGCTCTCAACATGAACACTGCCGAAGACGCAATCGTCAAGCTCACAAGAGAGATTGTTCCGGGTATGATCGTTACCGGAATGGAAGTTGCAGAGATTGATGGATCTCCTAGAATGGGGCCAACATTTGGAGCTATGATGATATCTGGACAGAAAGCGGCTCATCTGGCATTGAAGGCCCTCGGGCTGCCGAATGCATTGGATGGGACAAGCCTTCACCCCGAGCTGATCCTTGCGGCTGCTGATTCTGGCGAGACCGTTGATGCCTAA 1041 52.07 MASMTTTTFTSSLSNKTSYQSSFHGVFPMRIQSLVVKSNKNNNNTPITMSYDLGQFTFQPIKEAIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKEGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPMGATGVKRLRSVGMIESVPGMKALNMNTAEDAIVKLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTSLHPELILAAADSGETVDA 346
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu16g02483 346 FunFam Thiamine thiazole synthase, chloroplastic 83 318 - -
Hetu16g02483 346 Gene3D - 52 82 - -
Hetu16g02483 346 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 3 327 IPR027495 GO:0009228(InterPro)
Hetu16g02483 346 Pfam Thi4 family 67 300 - -
Hetu16g02483 346 SUPERFAMILY FAD-NAD(P)-binding domain 47 311 IPR036188 -
Hetu16g02483 346 NCBIfam sulfide-dependent adenosine diphosphate thiazole synthase 63 318 IPR002922 -
Hetu16g02483 346 PANTHER THIAMINE THIAZOLE SYNTHASE 13 345 - -
Hetu16g02483 346 Gene3D - 83 327 IPR036188 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu16g02483 K03146 cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]
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Event-related genes

Select Gene_1 Gene_2 Event_name
282959 Hetu16g02483 Hetu18g02642
285370 Hetu18g02642 Hetu16g02483
409878 Hetu16g02483 Hetu31g00880
409879 Hetu16g02483 Hetu32g00925
409880 Hetu16g02483 Hetu33g00984
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr16:130496058 Hetu18g02714 Hetu-Chr18:135914936 dispersed
Hetu Hetu-Chr16:130496058 Hetu17g02341 Hetu-Chr17:121696834 wgd
Hetu Hetu-Chr16:130496058 Hetu18g02642 Hetu-Chr18:129058874 wgd
Hetu Hetu-Chr16:130496058 Hetu31g00880 Hetu-Chr31:40049120 wgd
Hetu Hetu-Chr16:130496058 Hetu32g00925 Hetu-Chr32:43814125 wgd
Hetu Hetu-Chr16:130496058 Hetu33g00984 Hetu-Chr33:42574629 wgd