AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00582 ATGGAGGCATGTCTCTCTCGATCGATTTCATTCCAGACTCCGCCATTCTCTCTCCAAAACCTAAATATCTCTGTTACTTCTCTCTACGATCGTAACGACTCGCTGCTTCATCTTCCCCTTTCTATTTCGCTGCAATTAAGAACAGGAATTATTGGATTTGAATCTCTCTATCGCGTGCAAACCCTAAGGTTTTACACGATGGAGGATATGTTTGTGGCAATTCTTTCAATGCTTCTTCTTGTTGCCCTTGTTCCACTTTATCTATGGAAACGCCGTCAGGCTCCGCAGTCTAGTGATGAACACGAAGAACAACCGCAGATTCAGCAGAGAGAAACTGTTGTAAGACCTACTGGTGCGCGTAGCAGGATGCGCAGAAGGCATACTTCAGGAGCTAGCACATCTTCTGCTCCGCAAACTGTAGAAGCGGAAATTGAGGATGGAAGTGATGAAGAAGCTGTTGAAGGGGAATATTATAATGCAAGAACTTCAAAGAAGAAAGGAAGGAAGAAAGAGGAACGCCAAGCACAACGCCAGGCTGAAGAGGCTGCAAGGGAGTCAAGAAATACCAAACAAGATCGTTATGCAGAAATGCGCAGGAGGAAAGATGAGGAACATGAAGCAAGGGAACGGATGCTGGAAGAAGAAGCCGAGGCTCGAAAGGCCAAAGAGGAGGAAGCAACAGCTTTAGAGTTTGAGAAATGGAAAGGGGAATTTTCAGTAGATGCTGAAGGTACTACAGAAAATGAAGTTCAAGATGGAACCCAGGGTTTGCTTTTTGATTTTGTGGAGTACATTAAGAAACAGAAATGTATTCCGTTGGAAGATCTTGCTGCAGAATTTAAACTAAGGACTCAGGACTGTATCAATCGAATAACCTCATTGGAAGATATGGGGAGATTGTCGGGTGTGATGGACGATAGAGGAAAATACATATACATCTCACATGAAGAAATGCAGGCAGTTGCAGACTATATCAAGCGTGAAGGTCGGGTCAGCATTGCACATTTAGCAAGCCAATCAAACCAGTTCATAGATCTGGAACCCAAATCACAGTTTGTTGAGGATTTAGGCACTACAGAGGAGATTGCAGTTGCTTAA 1098 43.81 MEACLSRSISFQTPPFSLQNLNISVTSLYDRNDSLLHLPLSISLQLRTGIIGFESLYRVQTLRFYTMEDMFVAILSMLLLVALVPLYLWKRRQAPQSSDEHEEQPQIQQRETVVRPTGARSRMRRRHTSGASTSSAPQTVEAEIEDGSDEEAVEGEYYNARTSKKKGRKKEERQAQRQAEEAARESRNTKQDRYAEMRRRKDEEHEARERMLEEEAEARKAKEEEATALEFEKWKGEFSVDAEGTTENEVQDGTQGLLFDFVEYIKKQKCIPLEDLAAEFKLRTQDCINRITSLEDMGRLSGVMDDRGKYIYISHEEMQAVADYIKREGRVSIAHLASQSNQFIDLEPKSQFVEDLGTTEEIAVA 365
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00582 365 Pfam DDRGK domain 161 345 IPR019153 -
Smso29g00582 365 PANTHER DDRGK DOMAIN-CONTAINING PROTEIN 1 154 361 IPR050899 -
Smso29g00582 365 MobiDBLite consensus disorder prediction 172 225 - -
Smso29g00582 365 MobiDBLite consensus disorder prediction 96 225 - -
Smso29g00582 365 Coils Coil 194 232 - -
Smso29g00582 365 FunFam DDRGK domain-containing protein 1 256 313 - -
Smso29g00582 365 Coils Coil 165 192 - -
Smso29g00582 365 Gene3D - 256 313 IPR036388 -
Smso29g00582 365 SMART DDRGK-2 160 345 IPR019153 -
Smso29g00582 365 SUPERFAMILY Winged helix DNA-binding domain 252 321 IPR036390 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00582 K23344 DDRGK domain-containing protein 1
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Event-related genes

Select Gene_1 Gene_2 Event_name
337118 Smso29g00582 Smso7g00444
353819 Smso7g00444 Smso29g00582
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5096966 Smso Smso29g00582 Smso-Chr29:8510348 Smso7g00444 Smso-Chr7:7577063