AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cati3g00044 CGCTGTTGGGGTTCAATTTCTAGTTTCAAGATCTCCTCCATCCAATTTTCACAAACTCTCTCTTAAATCTTGCAAGCAAGCAAGCAACCAACTTGACCACCACCATTGTTGAACACTGGAGAAATGTCAACCAAATCTCTGAAATCCAAGAAACCCCCATCACCACCCCAAAATGCATCGTCAAGATCGTCTTCTCTTTCTTCCCATCTGGCCATGATTGAACTCAAACACAGAATCTTGACTTCACTCTCCAAACTCTCCGATAGAGACACCCACCAGATCGCCGTCGAAGACCTTGAAAAAATCATCCAAACCCTATCCCCAGATGGCATCACAATGCTCCTCAACTCGCTCTACGAGGCCACTAACGACAACAACAAACCCGCCGTCAAGAAAGAAGCAATCCGCCTTCTCTTCTTCCTCTGCGCCACCCACACCGAATCAGCCGCCTCCCATCTCACCAAAATCATAGCCCACATTGTCAAAAGGCTCAAAGACTCTGATTCGGGTGTTAAAGACGCGTGTCGAGAGTCGATTGGGCAGCTTTCTTGTCTGTATTTGAAAGGGGAGGGGGCTGAGAATATTGGGTCTGTGGTTTCATTGTTTGTGAAGCCTTTATTTGAGGCTTTGAATGATCAGAACAAAGGGGTGCAAGCTGGTTCAGCAATGTGTATGGCTAAGATGGTTGAGATGGCTTCAGACCCACCGATTTCGGCTTTTCAGAAGCTCTGTACCAGGATCTGCAAGTACCTAAACAACCCTAATTTCTTAGCCAAGGCTGCACTTTTGCAAGTGGTTTCTAGTCTTTCTCAGGTTGGTGCTATTTCTCCACAAGGTTTGGAGCCAGTGCTTCAAAGTATTCACGAATGTCTTAGCAATTCTGATTGGGCAACTAGGAAGGCAGCTGCTGATGCATTGAATGCCTTGGCTTTGCATTCAAGCAACCTGATCACAGGAAAAACAGCTTCTACAATAACAGCGCTTGAGGCTTGTCGCTTTGATAAGATAAAACCTGCAAGAGACAGTATAATAGAGGCTTTGCAACAATGGCAGGGTCTTGCAGGAGGTTCTGAAGATCAAAAAACACCTAGTCATGATTCTGAACCAGCAAAGTCGGATGAAAGAAAAACAGAGGCTCCAGTGAAGGCTGAAGAAGGCGAGGGTAGCAACGTACCTGAGAAGGCAGTTGGATTGTTGAAAAAGAAGGCACCTGCTTTGAGTGACAAAGAGCTAAATCCTGAGTTCTTTCAAAGACTTGAAAGAAGGGTCTCAGGTGAAGTGGAAGTGGTCGTCCCTCGTAGATTTGTCAAGTCCTCGAATGAGCAAAATGAACAAGAGTCGGGGCTTAATGATACAGATGCAGGATCACAGTCAAACCAAAAAGTGGAGAGAGGAGTTGGCGGTCCTTCTAGAAGGCGAGAATTCGATGATATGAATGATCCAAATCAAAGAGAGGGTTTGAGGAGTAATAAAGGTAACTGGTTGGCTATCCAGAGGCAATTACTACAATTGGAGAGACAACAGGCTCATCTCATGAACATGTTGCAGGATTTCATGGGTGGATCTCATGATGGCATGGTGACTCTAGAGAACAGAGTACGGGGTCTTGAGCGGGTTGTGGAAGACATGGCACGTGATCTATCACTAGCAGCAAATAATCGGAGAGGTGGTAATTACATGATGGGGTTTGAGGAATCTGGGAGACAATTAGGCAAGTACAATGGGTTCTCGGACTATCCAAATACAAAATTAGGGAGGAATGATGATGGGGGGGTCTCTTACATGGGTTCAAGTATGAGGGGTAGAGGATCTTCTTGGAGATCAGATGTGCCAGAAAGCTGGGATTACCATGCATATGGCAGAAATACGCAAATGGGTCTGCGGAGAGCAGCAGCAGCTATGGATGGTAGGTCGCCTAAATCAGATAACGGAAATGAGCAGGTGAATAGGAGAGGTTGGGGGGATAAAGGGGGTGGGCCTGCTAGGTTCGGGGAGGGGCCATCAGCAAGAAGTGTTTGGCAAGCTTCGAAAGATGAAGCCACATTGGAAGCCATTAGGGTGGCGGGTGAAGACAATGGGCCTATCCGAACTGCTCGAGTAGCTGTTCCTGAAATGACTGCCGAAGCTATGGGAGATGACAATCTTGTGCAGGATCGTGACCCGGTTTGGACGGCTTGGACTAATGCAATGGATGCACTTCATGTTGGTGACATTGACACGGCATTTGCTGAAGTTTTGGCTACTGGGGATGATCTTTTGCTTGTGAAGCTAATGGACAGAACTGGCCCTGCAGTTGATCAGCTCTCCAGTGAGGTGGGGACTGAAGTTCTGCATGCTGTTGCCCAATTTCTTCCAGACCCAAACTTGTTTGACATCTGCTTGTCTTGGCTTCAACAGTTGCTCGATATGATTGTAGAGAATGGATCGGATATGGTGGGAATCCCGATGGAAGTGAAAAGAGAGATTTTGTTGAATCTGAACGAAGCTTCGTCAACTATTGAACCTCCCGAAGACTGGGAAGGTTTGGTGCCAGACCAACTCTTGTTGCAGCTGGCATCCGCCTGGGATATTGACCTGCACCAGCTAGAGAAGTAGCTGGTTTGATGCATAATTATTTGAAATTTGCGTCTGCATAGGGGCAGTCCTTGGAGACAGCCCTTGCATTCGGATTTTGCTTCTTGCAACTCATAATCTTTGATTGAAGATAGGGTATTGGATTTGGTTTTATCAGCTTTGACATCAAATGTAGATGAAACAAGATGAAGGCTTGTATTCTCAGTTTGTTTTCCTTCTTTGCAGCAAGAGTAATGAAATTTGTTTTGTATGTGATATTGCTTTATACATGTCGGCACGATTTCATAATTCTCATTGGCAAAAGTAAAGAACTGTAAAGCAGACAGTAGCATATATGGGGTTTCAGAAGCAAATAGCAGGTCGATGTACAAAATTTCTTCTAAAAACAGACAACTAAACGCAACGTAAGCTAACTAGTTCATATGCCCTTGTAAGGTTTTGATGAAACTACTGTAAGCATGATTGTAAACCGATCTACATTAACCTGTGACCAAGTTTTTTAGCTTTGAGATGTGCAAAAAAGTTTTGTGATTCTTGCGTCAAGTTCCAGTGCCATTGCAATAACCTCATCGGTGATGCCAGGGTATCCTACATCTGCAGTTTCGGTGTCATCTACAGATTCTTTGGACCCTTGGGTTCTTGATTCATCTTTGACAGAGATTTCGAATGTTCCGTCATCATCACCACCCATGGGAGGAGAGCTTCTTGCTTGGATTCCAACCCCAACAGACTTACTCCACCACTCCATGTATCTAGAAGTCACATATGGCTCGTAGAACTTGGATGGAAGATACACTCGAACGTCCCTAATTGGCCTCGTGTAAAACCTCCATGCGGTTTCAGGAGATGAATTCTGTCGTGGCACGTCACCAGGAACATCTTGGTCCATCCCAAATTGCATTGCAACTCTATGAGGCAGGTATTGTTCGATACAGCTTCCAGATATCCCAACAAGTTCAGAAGCTCTCAAACATCGAACCCATGACTCCAATTCTTCGTCTAAGCCATCATCGCCAATTACGACCCACCTTCCCTTTTCTTGATAAACCTTATTCGAAAACAAATCATCAATTCCAGTCGCAGCATATGGTCGCCAAGAAAACTTTTCTAGAGCACAATCTGAAAGCGAGCCAGCCTTGTATATGTGCAACCTCTTCTTGTCCCATCTAGAAAATCTCGGCTTGCAACCATCTCCGGCATTACAAGCGGATTGCGTAAGCTTGGGTAACCTCTCCCAAATCCAGACTTGCACAAGTTGTAAAGGAGCCCAAACTGTAACCGATACCTCCTCCTCATCATCGTTCAAGTTCATGGAATCATCGAATTTAGCTTTTAGCAAGCTCAAATCTCTGTAAAGGGTGGCAAGAACAGCAGGTGCAAGAGCAATTCTGATGCCTCTAGCTAAACGAATAGCAATGGGGAAAACATTTTTGGGAATAGTGGTGTATGTTGAAGGGAAGACAAACCTGGATAACCATAATATAAGAAATGCTTCATGCTCCACTTCACTCCCACTGTCTTTGAACTTCTTTAACCAACCAGTCTGAGATGCCTTGTTAGACTTACCTCTTGAAAGCTCCAGTCTTGCTTCATCCAGCTTGGTTAAGACTGTTTGTGATTCAGGAGGAGTGGTTTCATTGAAGACAGATTCGCCTAATGCAGAGTAGCCTCCAAGAACAACCATGTCTTCCAAGGTGATTGTGGCTTCTCCCCATACGAAGACGAAGGAGTTGGTGTTAGGGCACCAGTTTTCTGCAAGGCCTATGATGGAATCGTCGTTCTTGATGATGTCGTAGGAGGAGTTGAGGATGGCGTGGTGTATGCCTGCTTTCTTCCAGGTGGATTGATGCAGGGAATGCATACGATGGAGCCAGGGTTTCCAATCCTTTGGTGGGAGCCTCCAGCCGTTGAAGTTGAAGGAGACATTAGAACAGCAAATTTGGGGAGGATTGTATGAAAAATCAGGTATGGAAGAAGTGAGGGAGGAGGGTTTTAGAAACCGAGCAAGCCTGGGTTTTGGTTGATGGTGTTGTTGAGTAAGATGATGATGGTTGCGTGATAGCATCAGCTCCTGTCTCTCTTCCATGATGGTGTCTTCTTGTTCCGCCATTGTTGTTACTTACAGGTGAAGAAGGAAGGGTAAATATTTTCGGATGAAATGA 4736 45.23 MSTKSLKSKKPPSPPQNASSRSSSLSSHLAMIELKHRILTSLSKLSDRDTHQIAVEDLEKIIQTLSPDGITMLLNSLYEATNDNNKPAVKKEAIRLLFFLCATHTESAASHLTKIIAHIVKRLKDSDSGVKDACRESIGQLSCLYLKGEGAENIGSVVSLFVKPLFEALNDQNKGVQAGSAMCMAKMVEMASDPPISAFQKLCTRICKYLNNPNFLAKAALLQVVSSLSQVGAISPQGLEPVLQSIHECLSNSDWATRKAAADALNALALHSSNLITGKTASTITALEACRFDKIKPARDSIIEALQQWQGLAGGSEDQKTPSHDSEPAKSDERKTEAPVKAEEGEGSNVPEKAVGLLKKKAPALSDKELNPEFFQRLERRVSGEVEVVVPRRFVKSSNEQNEQESGLNDTDAGSQSNQKVERGVGGPSRRREFDDMNDPNQREGLRSNKGNWLAIQRQLLQLERQQAHLMNMLQDFMGGSHDGMVTLENRVRGLERVVEDMARDLSLAANNRRGGNYMMGFEESGRQLGKYNGFSDYPNTKLGRNDDGGVSYMGSSMRGRGSSWRSDVPESWDYHAYGRNTQMGLRRAAAAMDGRSPKSDNGNEQVNRRGWGDKGGGPARFGEGPSARSVWQASKDEATLEAIRVAGEDNGPIRTARVAVPEMTAEAMGDDNLVQDRDPVWTAWTNAMDALHVGDIDTAFAEVLATGDDLLLVKLMDRTGPAVDQLSSEVGTEVLHAVAQFLPDPNLFDICLSWLQQLLDMIVENGSDMVGIPMEVKREILLNLNEASSTIEPPEDWEGLVPDQLLLQLASAWDIDLHQLEK 823
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cati3g00044 823 Gene3D - 147 297 IPR011989 -
Cati3g00044 823 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 21 816 IPR033337 GO:0005874(InterPro)|GO:0007275(PANTHER)|GO:0008017(InterPro)|GO:0008017(PANTHER)|GO:0009826(PANTHER)|GO:0010005(PANTHER)|GO:0010031(PANTHER)
Cati3g00044 823 MobiDBLite consensus disorder prediction 397 423 - -
Cati3g00044 823 MobiDBLite consensus disorder prediction 397 450 - -
Cati3g00044 823 SUPERFAMILY ARM repeat 37 794 IPR016024 -
Cati3g00044 823 MobiDBLite consensus disorder prediction 320 348 - -
Cati3g00044 823 MobiDBLite consensus disorder prediction 312 354 - -
Cati3g00044 823 MobiDBLite consensus disorder prediction 1 25 - -
Cati3g00044 823 Gene3D - 33 146 IPR011989 -
Cati3g00044 823 MobiDBLite consensus disorder prediction 590 627 - -
Cati3g00044 823 FunFam Microtubule-associated protein TORTIFOLIA1 147 304 - -
Cati3g00044 823 Coils Coil 485 505 - -
Cati3g00044 823 MobiDBLite consensus disorder prediction 425 443 - -
Cati3g00044 823 SMART TOG-3 60 301 IPR034085 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cati3g00044 K28093 microtubule-associated protein TORTIFOLIA1 and related proteins
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Event-related genes

Select Gene_1 Gene_2 Event_name
35459 Cati3g00044 Cati9g02001
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
895797 Cati Cati3g00044 Cati-Chr3:239820 Cati9g00819 Cati-Chr9:7174687
933557 Cati Cati5g00626 Cati-Chr5:6763943 Cati3g00044 Cati-Chr3:239820
940030 Cati Cati3g00044 Cati-Chr3:239820 Cati9g02001 Cati-Chr9:21459226