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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pslu1g20887 ATGGGAAAGTCGGTACTTGTTGCCGGTCTTTTATGTCTTTTATTGTTAATACAAATCAGTGATGCATATGAGTTCATGGTTGGAGGTTCTGGTGATTGGAGTCTTGCATCAACATCCTATAATAAATGGGCAGAAAAAAGCCGTTTCCAAATCGGGGACACCGTTTTGTTCAAGTACCAAGCTGGGAAGGACTCAGTCGTTCAAGTAAGCAAAGAAGATTACAACAATTGCAATGCAGCATCACCCATTGCAAAGTATAGTGATGGTCATTCCGTGGTAAAGTTGACCCAATCTGGGCCTCATTATTTCATCAGTGGACTAGTGGAGAACTGTAAAAACAACGAGAAGATCGTGATAGTTGTCATGGCAGATAGAAGCCACAGATCACCTCCAAGCTCTCCTCCGTCCCCAGCTCCGGCAGGTGAAGAGTCTCCATCTCCTCCTCCGGCAAGCGAAGAATCTCCATCTCCGCCACCTGCTCCAGCAACAGAAGATAATAACCCGACTCCAGCTCCAAATTCAGCATCTTCAATTCTCACAAGTTTCATTTACTCTATTCTTGTTTTTGCTGGGTCTTCACTTCTCTTTGTTTTTTAA 597 43.89 MGKSVLVAGLLCLLLLIQISDAYEFMVGGSGDWSLASTSYNKWAEKSRFQIGDTVLFKYQAGKDSVVQVSKEDYNNCNAASPIAKYSDGHSVVKLTQSGPHYFISGLVENCKNNEKIVIVVMADRSHRSPPSSPPSPAPAGEESPSPPPASEESPSPPPAPATEDNNPTPAPNSASSILTSFIYSILVFAGSSLLFVF 198
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pslu1g20887 198 ProSiteProfiles Phytocyanin domain profile. 23 123 IPR003245 GO:0009055(InterPro)
Pslu1g20887 198 MobiDBLite consensus disorder prediction 130 166 - -
Pslu1g20887 198 CDD OsENODL1-like 23 122 IPR041846 -
Pslu1g20887 198 PANTHER BLUE COPPER PROTEIN 15 144 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Pslu1g20887 198 Pfam Plastocyanin-like domain 33 113 IPR003245 GO:0009055(InterPro)
Pslu1g20887 198 Gene3D - 23 132 IPR008972 -
Pslu1g20887 198 MobiDBLite consensus disorder prediction 124 174 - -
Pslu1g20887 198 FunFam Early nodulin-like protein 1 22 126 - -
Pslu1g20887 198 SUPERFAMILY Cupredoxins 22 122 IPR008972 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pslu1g20887 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
134859 Pslu1g20887 Pslu2g00618
134860 Pslu1g20887 Pslu3g16133
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4482477 Pslu Pslu2g14604 Pslu-Chr2:108484792 Pslu1g20887 Pslu-Chr1:150443048
4482484 Pslu Pslu2g14622 Pslu-Chr2:108627698 Pslu1g20887 Pslu-Chr1:150443048
4513946 Pslu Pslu1g20887 Pslu-Chr1:150443048 Pslu2g00618 Pslu-Chr2:3980515
4521030 Pslu Pslu1g20887 Pslu-Chr1:150443048 Pslu3g16133 Pslu-Chr3:116056470
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Pslu1g06744 . 18 136 PhytocyaNIN gene family AT1G17800 40.496 1.78e-21 81.6
Pslu1g08006 . 27 118 PhytocyaNIN gene family AT3G20570 33.333 1.93e-12 59.7
Pslu1g20887 ACH 6 202 PhytocyaNIN gene family AT3G20570 47.03 2.57e-53 167.0
Pslu1g21099 . 7 156 PhytocyaNIN gene family AT4G27520 50.98 3.75e-47 157.0
Pslu2g00618 ACH 14 178 PhytocyaNIN gene family AT3G20570 45.455 1.86e-43 142.0
Pslu2g14604 . 26 193 PhytocyaNIN gene family AT4G28365 45.238 2.90e-45 147.0
Pslu2g14622 . 26 194 PhytocyaNIN gene family AT4G28365 45.562 7.57e-46 148.0
Pslu3g00768 . 6 124 PhytocyaNIN gene family AT2G27035 32.52 1.88e-14 64.3
Pslu3g00769 . 2 124 PhytocyaNIN gene family AT2G27035 33.858 3.32e-18 73.9
Pslu3g00770 . 11 164 PhytocyaNIN gene family AT5G15350 36.364 3.40e-37 124.0
Pslu3g14886 . 33 191 PhytocyaNIN gene family AT1G64640 52.663 3.48e-49 156.0
Pslu3g16133 ACH 9 202 PhytocyaNIN gene family AT3G20570 47.0 7.37e-54 169.0
Pslu4g01949 . 6 168 PhytocyaNIN gene family AT5G15350 50.307 9.03e-54 167.0
Pslu4g05052 . 12 153 PhytocyaNIN gene family AT1G08500 43.056 2.89e-33 117.0
Pslu4g09290 . 8 199 PhytocyaNIN gene family AT1G08500 54.455 1.18e-67 206.0
Pslu5g15638 ACH 19 134 PhytocyaNIN gene family AT1G79800 45.69 1.56e-36 124.0
Pslu5g16206 . 3 171 PhytocyaNIN gene family AT4G31840 40.678 2.90e-44 143.0
Pslu5g16368 ACH 16 156 PhytocyaNIN gene family AT2G25060 36.17 2.00e-25 96.7
Pslu6g03259 . 8 168 PhytocyaNIN gene family AT5G15350 49.689 1.31e-55 171.0
Pslu6g03268 . 32 141 PhytocyaNIN gene family AT2G27035 51.304 2.96e-39 129.0
Pslu6g14327 . 13 129 PhytocyaNIN gene family AT1G48940 54.237 2.27e-43 140.0
Pslu6g15808 ACH 14 146 PhytocyaNIN gene family AT1G79800 46.617 5.63e-37 125.0