AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu1g00005 ATGGGCAACTACAGGTTCAGATTCTCAAACATCATACCAAACTCATGGTTTTACACTTCTACCACAACTAATAACAACAAAATTACCAAACCACAACCCATCACAACTTCATCTTCTTCATCATCTGTATCATCACAACCCGCAATACACCACAGAAAATCCTATTATTTCACTAGAGAGTTAAGTGTACCCGACCCGACGACCACCCCTATTCACGATCGGTCACCACCCGAACCGCGGAGAAAGTCATCCAAGAAAAAAAGACCTACTACCCCCAAGAAACCAATTCCGCGAAAATTGATTTCTCCTGATATTGATCCGACAACTGCACGATGCAGCTACGGGATTGTACCGGAGTCTCTTGAAACAGACTCCATAGAAATTTTCTCGGATAACGAAGTGTTGTTGCCTGAACAACCAAGACCACTTGGTTGTTCGTGCACAACAAATTCGTTAAACGAGGAGGTTTATGCGAGAGTTGACCTCCCGCGGATAATAACCAAACCGGTCAAACAGGACGAATTCGGGCCGGGTAAATGGGTGGTTAATGGAGGAAGTCGGATGGGTAGTCCGGTTAGAAAAGCGAAAGGAAACGGTTACTCACCGCGGTTAGGGAACCGGGTTAAGGTAAATGGGATAAGGAGGAGGAACGGGAAGGGGCGGAGCTTGTCCGAAAGTTTGGCGGTTGTGAAAACATCTGCGGATCCCGGGAGGGATTTTAAGGAATCAATGGTTGAGATGATAATGGAGAATAATATTAAGAGTTCAAAAGATTTGGAAGATCTTCTTGCATGTTATCTTGCATTGAATTCTGATGAGTATCATGACTTGATCATCAAGGTATTCAAGCAGATTTGGTTCGAGTGTACTGATATTAGACTGTAG 885 44.07 MGNYRFRFSNIIPNSWFYTSTTTNNNKITKPQPITTSSSSSSVSSQPAIHHRKSYYFTRELSVPDPTTTPIHDRSPPEPRRKSSKKKRPTTPKKPIPRKLISPDIDPTTARCSYGIVPESLETDSIEIFSDNEVLLPEQPRPLGCSCTTNSLNEEVYARVDLPRIITKPVKQDEFGPGKWVVNGGSRMGSPVRKAKGNGYSPRLGNRVKVNGIRRRNGKGRSLSESLAVVKTSADPGRDFKESMVEMIMENNIKSSKDLEDLLACYLALNSDEYHDLIIKVFKQIWFECTDIRL 294
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu1g00005 294 Pfam DNA-binding domain 1 46 IPR025830 GO:0003677(InterPro)
Hetu1g00005 294 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 38 289 IPR038933 GO:0045892(InterPro)
Hetu1g00005 294 Pfam Transcriptional repressor, ovate 233 288 IPR006458 -
Hetu1g00005 294 NCBIfam uncharacterized plant-specific domain TIGR01568 228 288 IPR006458 -
Hetu1g00005 294 MobiDBLite consensus disorder prediction 23 104 - -
Hetu1g00005 294 ProSiteProfiles OVATE domain profile. 229 288 IPR006458 -
Hetu1g00005 294 MobiDBLite consensus disorder prediction 23 51 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu1g00005 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
266740 Hetu1g00005 Hetu2g00083
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr1:529255 Hetu23g03219 Hetu-Chr23:186436852 dispersed
Hetu Hetu-Chr1:529255 Hetu2g00083 Hetu-Chr2:2652378 wgd
Hetu Hetu-Chr1:529255 Hetu2g00006 Hetu-Chr2:387040 wgd
Hetu Hetu-Chr1:529255 Hetu3g00006 Hetu-Chr3:370710 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hetu Ovate 3.4e-24 No_clan TF OFP