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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
  The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00011 Cobi2g02195 Bial10g01244 Bial22g00837 Dapi4g01794 Dapi20g01732 . . . Amtr12g00198 Smso1g03533 . Taer4g02266 Fro14g01204 Fso1g01974 Ftr2g00889 Fra18g01680 Fli3g00925 Stre1g04235 Mimi16g02051 . . . . . . . . . . . . . . . . . . . .
Hean1g00012 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00013 Cobi2g02198 Bial10g01245 Bial22g00838 Dapi4g01795 Dapi20g01733 Hetu1g00012 Hetu2g00009 Hetu3g00011 Amtr12g00209 Smso1g03534 . . . . . . . Stre1g04236 Mimi16g02052 . . . . . . . . . . . . . . . . . . . .
Hean1g00014 Cobi2g02199 . . . . . . . Amtr12g00211 Smso1g03538 . . . . . . . Stre1g04237 Mimi16g02053 . . . . . . . . . . . . . . . . . . . .
Hean1g00015 Cobi2g02200 Bial10g01249 Bial22g00840 Dapi4g01798 Dapi20g01735 . . . . . . . . . . . . Stre1g04239 Mimi16g02054 . . . . . . . . . . . . . . . . . . . .
Hean1g00016 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00017 Cobi2g02202 Bial10g01250 Bial22g00841 Dapi4g01799 Dapi20g01736 . Hetu2g00016 Hetu3g00013 Amtr12g00214 Smso1g03539 . . . . . . . Stre1g04241 Mimi16g02055 Hean11g02532 Cobi6g01053 . Bial24g02556 Dapi4g01799 Dapi31g02034 Hetu32g02152 . Hetu33g02089 Amtr07g04607 . Smso20g01794 Taer4g02276 Fro13g01319 Fso12g01883 Ftr6g02274 Fra13g01455 Fli9g01357 Stre1g04238 Mimi16g02054
Hean1g00018 Cobi2g02207 Bial10g01251 Bial22g00842 Dapi4g01800 Dapi20g01737 . Hetu2g00017 . Amtr12g00217 Smso1g03540 . . . . . . . Stre1g04242 Mimi16g02057 . . . . . . . . . . . . . . . . . . . .
Hean1g00019 Cobi2g02209 . Bial22g00843 Dapi4g01802 Dapi20g01739 Hetu1g00014 Hetu2g00018 Hetu3g00015 Amtr12g00223 Smso1g03543 Smso28g00528 Taer4g02288 Fro14g01214 Fso1g02003 Ftr2g00870 Fra18g01692 Fli3g00918 Stre1g04244 Mimi16g02058 . . . . . . . . . . . . . . . . . . . .
Hean1g00020 . Bial10g01252 Bial22g00844 Dapi4g01803 Dapi20g01740 Hetu1g00015 Hetu2g00019 Hetu3g00016 Amtr12g00224 Smso1g03544 . Taer4g02289 Fro14g01215 Fso1g02005 Ftr2g00868 Fra18g01825 Fli3g00917 Stre1g04245 . Hean11g02537 Cobi6g01051 Bial12g02713 Bial24g02557 Dapi4g01803 Dapi31g02035 . Hetu31g02157 Hetu33g02091 Amtr07g04620 . Smso20g01800 Taer4g02289 Fro13g01320 Fso12g01884 Ftr6g02275 . Fli9g01360 Stre1g04245 .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
7 97932712 97933340 - AtrifAMIRv0_Chr07g0497541 Amtr07g04607 4607
7 98162245 98165006 + AtrifAMIRv0_Chr07g0497671 Amtr07g04620 4620
12 6349452 6355510 - AtrifAMIRv0_Chr12g0719301 Amtr12g00198 198
12 6558975 6565137 + AtrifAMIRv0_Chr12g0719411 Amtr12g00209 209
12 6625477 6626760 + AtrifAMIRv0_Chr12g0719431 Amtr12g00211 211
12 6881936 6883048 - AtrifAMIRv0_Chr12g0719461 Amtr12g00214 214
12 6929985 6931011 - AtrifAMIRv0_Chr12g0719491 Amtr12g00217 217
12 7264980 7265513 + AtrifAMIRv0_Chr12g0719551 Amtr12g00223 223
12 7301463 7304608 + AtrifAMIRv0_Chr12g0719561 Amtr12g00224 224
10 12489179 12496919 - g86925.t1 Bial10g01244 1244
10 12503498 12507522 + g86924.t1 Bial10g01245 1245
10 12534888 12535280 - g86920.t1 Bial10g01249 1249
10 12544913 12545914 + g86919.t1 Bial10g01250 1250
10 12549038 12550104 - g86918.t1 Bial10g01251 1251
10 12559982 12566042 + g86917.t1 Bial10g01252 1252
12 57342538 57344508 + g35912.t1 Bial12g02713 2713
22 8046049 8049743 - g147197.t1 Bial22g00837 837
22 8057306 8060410 + g147196.t1 Bial22g00838 838
22 8089959 8090800 - g147194.t1 Bial22g00840 840
22 8112506 8113396 + g147193.t1 Bial22g00841 841
22 8116468 8117604 - g147192.t1 Bial22g00842 842
22 8124928 8125446 + g147191.t1 Bial22g00843 843
22 8127649 8129643 + g147190.t1 Bial22g00844 844
24 56428559 56428912 - g68222.t1 Bial24g02556 2556
24 56446209 56448473 + g68223.t1 Bial24g02557 2557
2 67739613 67744105 - h2tg000016l_1.g5051.t1 Cobi2g02195 2195
2 67837947 67840990 + h2tg000016l_1.g5048.t1 Cobi2g02198 2198
2 67876220 67885083 + h2tg000016l_1.g5047.t1 Cobi2g02199 2199
2 67897209 67897678 - h2tg000016l_1.g5046.t1 Cobi2g02200 2200
2 67955999 67956952 - h2tg000016l_1.g5044.t1 Cobi2g02202 2202
2 68025095 68025531 - h2tg000016l_1.g5039.t1 Cobi2g02207 2207
2 68170686 68171192 + h2tg000016l_1.g5037.t1 Cobi2g02209 2209
6 8438074 8440383 - h2tg000031l_1.g19364.t1 Cobi6g01051 1051
6 8453555 8454433 + h2tg000031l_1.g19366.t1 Cobi6g01053 1053
4 113801986 113810158 - h1tg000180l.g132108.t1 Dapi4g01794 1794
4 113889735 113895016 + h1tg000180l.g132109.t1 Dapi4g01795 1795
4 114138997 114139645 + h1tg000180l.g132112.t1 Dapi4g01798 1798
4 114185995 114187357 - h1tg000180l.g132113.t1 Dapi4g01799 1799
4 114343172 114346625 - h1tg000180l.g132114.t1 Dapi4g01800 1800
4 114502412 114502936 + h1tg000180l.g132116.t1 Dapi4g01802 1802
4 114506212 114508100 + h1tg000180l.g132117.t1 Dapi4g01803 1803
20 105064148 105072196 - h1tg000033l.g91448.t1 Dapi20g01732 1732
20 105149605 105157648 + h1tg000033l.g91449.t1 Dapi20g01733 1733
20 105373647 105374165 - h1tg000033l.g91451.t1 Dapi20g01735 1735
20 105405479 105406127 + h1tg000033l.g91452.t1 Dapi20g01736 1736
20 105492009 105493378 - h1tg000033l.g91453.t1 Dapi20g01737 1737
20 105707292 105707816 + h1tg000033l.g91455.t1 Dapi20g01739 1739
20 105710558 105712409 + h1tg000033l.g91456.t1 Dapi20g01740 1740
31 100692089 100693336 - h2tg000063l.g12119.t1 Dapi31g02034 2034
31 100848853 100852290 + h2tg000063l.g12120.t1 Dapi31g02035 2035
3 25366339 25369648 - FliAMIRv0_Chr03g0081861 Fli3g00917 917
3 25374488 25374994 - FliAMIRv0_Chr03g0081871 Fli3g00918 918
3 25626971 25632062 + FliAMIRv0_Chr03g0081941 Fli3g00925 925
9 70333114 70333927 - FliAMIRv0_Chr09g0221231 Fli9g01357 1357
9 70424862 70431098 + FliAMIRv0_Chr09g0221261 Fli9g01360 1360
13 42880139 42881085 + FraAMIRv0_Chr13g0267631 Fra13g01455 1455
18 64242914 64243628 - FraAMIRv0_Chr18g0358771 Fra18g01680 1680
18 64765243 64765749 + FraAMIRv0_Chr18g0358891 Fra18g01692 1692
18 69427163 69429139 - FraAMIRv0_Chr18g0360221 Fra18g01825 1825
13 22745714 22746596 - FroAMIRv0_Chr13g0235011 Fro13g01319 1319
13 22760092 22763374 + FroAMIRv0_Chr13g0235021 Fro13g01320 1320
14 19510667 19515770 - FroAMIRv0_Chr14g0253581 Fro14g01204 1204
14 19647683 19648189 + FroAMIRv0_Chr14g0253681 Fro14g01214 1214
14 19654263 19657749 + FroAMIRv0_Chr14g0253691 Fro14g01215 1215
1 58534690 58539604 - FsoAMIRv0_Chr01g0019731 Fso1g01974 1974
1 59068119 59068625 + FsoAMIRv0_Chr01g0020021 Fso1g02003 2003
1 59090596 59093738 + FsoAMIRv0_Chr01g0020041 Fso1g02005 2005
12 57231543 57232482 - FsoAMIRv0_Chr12g0308471 Fso12g01883 1883
12 57253972 57257774 + FsoAMIRv0_Chr12g0308481 Fso12g01884 1884
2 16740417 16743727 - FtrAMIRv0_Chr02g0037351 Ftr2g00868 868
2 16784888 16785394 - FtrAMIRv0_Chr02g0037371 Ftr2g00870 870
2 17805636 17811057 + FtrAMIRv0_Chr02g0037561 Ftr2g00889 889
6 89494536 89495516 - FtrAMIRv0_Chr06g0184231 Ftr6g02274 2274
6 89556020 89559526 + FtrAMIRv0_Chr06g0184241 Ftr6g02275 2275
1 419694 426523 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000131 Hean1g00011 11
1 505043 505997 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000141 Hean1g00012 12
1 525916 528522 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000161 Hean1g00013 13
1 556907 558421 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000171 Hean1g00014 14
1 581378 582532 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000191 Hean1g00015 15
1 584131 586570 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000201 Hean1g00016 16
1 586057 586422 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000211 Hean1g00017 17
1 624411 625640 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000221 Hean1g00018 18
1 760652 761182 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000231 Hean1g00019 19
1 764233 766824 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000241 Hean1g00020 20
11 113297774 113298957 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0496131 Hean11g02532 2532
11 113831268 113835069 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0496191 Hean11g02537 2537
1 852825 855270 + >Htub.h1tg002714l.g240.t1 Hetu1g00012 12
1 1167469 1167999 + >Htub.h1tg002714l.g238.t1 Hetu1g00014 14
1 1170002 1173815 + >Htub.h1tg002714l.g237.t1 Hetu1g00015 15
2 506826 509240 + >Htub.h1tg004339l.g209.t1 Hetu2g00009 9
2 611807 612172 - >Htub.h1tg004339l.g202.t1 Hetu2g00016 16
2 702259 703016 - >Htub.h1tg004339l.g201.t1 Hetu2g00017 17
2 789032 789562 + >Htub.h1tg004339l.g200.t1 Hetu2g00018 18
2 834434 836583 + >Htub.h1tg004339l.g199.t1 Hetu2g00019 19
3 856346 858789 + >Htub.h1tg000837l.g134.t1 Hetu3g00011 11
3 910395 911230 + >Htub.h1tg000837l.g132.t1 Hetu3g00013 13
3 1028456 1028986 + >Htub.h1tg000837l.g130.t1 Hetu3g00015 15
3 1041021 1045296 + >Htub.h1tg000837l.g129.t1 Hetu3g00016 16
31 123291239 123295215 + >Htub.h1tg001293l.g236.t1 Hetu31g02157 2157
32 124824244 124824612 - >Htub.h1tg000110l.g31.t1 Hetu32g02152 2152
33 117179010 117179435 - >Htub.h1tg000866l.g472.t1 Hetu33g02089 2089
33 117708617 117719033 + >Htub.h1tg000866l.g470.t1 Hetu33g02091 2091
16 82313279 82316406 - KAD3338121.1 Mimi16g02051 2051
16 82366611 82377297 + KAD3338122.1 Mimi16g02052 2052
16 82378687 82389698 + KAD3338123.1 Mimi16g02053 2053
16 82404017 82405929 + KAD3338124.1 Mimi16g02054 2054
16 82408584 82410051 - KAD3338125.1 Mimi16g02055 2055
16 82470999 82472120 - KAD3338127.1 Mimi16g02057 2057
16 82508407 82510833 + KAD3338128.1 Mimi16g02058 2058
1 119987862 119993447 - KAI3829496.1 Smso1g03533 3533
1 120161929 120167612 + KAI3829497.1 Smso1g03534 3534
1 120206469 120214716 + KAI3829501.1 Smso1g03538 3538
1 120227999 120228474 - KAI3829502.1 Smso1g03539 3539
1 120259806 120260476 + KAI3829503.1 Smso1g03540 3540
1 120283037 120283567 + KAI3829506.1 Smso1g03543 3543
1 120301988 120309048 + KAI3829507.1 Smso1g03544 3544
20 60940327 60941345 - KAI3742790.1 Smso20g01794 1794
20 61076355 61081110 + KAI3742796.1 Smso20g01800 1800
28 14931206 14931736 - KAI3682808.1 Smso28g00528 528
1 128203607 128210573 - Streb.1G042350.1 Stre1g04235 4235
1 128252148 128256373 + Streb.1G042360.1 Stre1g04236 4236
1 128288008 128291619 + Streb.1G042370.1 Stre1g04237 4237
1 128293100 128293538 - Streb.1G042380.1 Stre1g04238 4238
1 128298067 128299284 + Streb.1G042390.1 Stre1g04239 4239
1 128313369 128314217 - Streb.1G042410.1 Stre1g04241 4241
1 128332282 128333407 - Streb.1G042420.1 Stre1g04242 4242
1 128359017 128359775 + Streb.1G042440.1 Stre1g04244 4244
1 128360290 128363966 + Streb.1G042450.1 Stre1g04245 4245
4 51971418 51976569 - >KAK1428049.1 Taer4g02266 2266
4 52239143 52239514 - >KAK1428059.1 Taer4g02276 2276
4 52633047 52633565 + >KAK1428071.1 Taer4g02288 2288
4 52658095 52660784 + >KAK1428072.1 Taer4g02289 2289
       
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