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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
  The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00021 Cobi2g02210 Bial10g01253 Bial22g00845 Dapi4g01804 Dapi20g01741 Hetu1g00016 Hetu2g00020 Hetu3g00017 Amtr12g00231 Smso1g03545 Smso28g00527 Taer4g02290 Fro14g01216 Fso1g02006 Ftr2g00867 . Fli3g00916 Stre1g04246 Mimi16g02059 . . . . . . . . . . . . . . . . . . . .
Hean1g00022 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00023 . . . . . . . . . . . . Fro14g01219 Fso1g02008 . . Fli3g00913 . . . . . . . . . . . . . . . . . . . . . .
Hean1g00024 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00025 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00026 . Bial10g01256 . . . . . . Amtr12g00242 Smso1g03551 . Taer4g02299 Fro14g01223 Fso1g02017 Ftr2g00862 Fra18g01698 Fli3g00907 Stre1g04250 . . . . . . . . . . . . . . . . . . . . .
Hean1g00027 Cobi2g02219 Bial10g01257 Bial22g00849 Dapi4g01811 Dapi20g01748 Hetu1g00025 Hetu2g00028 Hetu3g00023 Amtr12g00245 Smso1g03553 Smso28g00526 Taer4g02300 Fro14g01224 Fso1g02018 Ftr2g00861 Fra18g01699 Fli3g00903 Stre1g04251 . . . . . . . . . . . . . . . . . . . . .
Hean1g00028 Cobi2g02220 . . . . . . . . . . Taer4g02307 Fro14g01225 Fso1g02019 . Fra18g01770 Fli3g00902 . Mimi16g02063 . . . . . . . . . . . . . . . . . . . .
Hean1g00029 Cobi2g02221 Bial10g01261 Bial22g00852 Dapi4g01813 Dapi20g01750 Hetu1g00027 Hetu2g00030 Hetu3g00046 Amtr12g00251 . . Taer4g02308 Fro14g01226 Fso1g02020 . Fra18g01701 Fli3g00901 Stre1g04253 Mimi16g02064 . . . . . . . . . . . . . . . . . . . .
Hean1g00030 Cobi2g02222 Bial10g01262 . Dapi4g01814 Dapi20g01751 Hetu1g00028 Hetu2g00031 Hetu3g00047 Amtr12g00252 Smso1g03556 Smso28g00524 Taer4g02310 Fro14g01227 Fso1g02023 Ftr2g00853 Fra18g01702 Fli3g00895 Stre1g04255 Mimi16g02066 Hean11g02538 Cobi6g01050 Bial12g02714 . Dapi4g01814 Dapi31g02037 Hetu32g02164 Hetu31g02158 Hetu33g02092 Amtr07g04621 . Smso20g01802 . . . . . . Stre1g04255 Mimi16g02066
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
7 98168498 98172972 - AtrifAMIRv0_Chr07g0497681 Amtr07g04621 4621
12 7380727 7382142 - AtrifAMIRv0_Chr12g0719631 Amtr12g00231 231
12 7581902 7588496 - AtrifAMIRv0_Chr12g0719741 Amtr12g00242 242
12 7647219 7648020 - AtrifAMIRv0_Chr12g0719771 Amtr12g00245 245
12 7784508 7786311 - AtrifAMIRv0_Chr12g0719831 Amtr12g00251 251
12 7838439 7842838 - AtrifAMIRv0_Chr12g0719841 Amtr12g00252 252
10 12566993 12568354 - g86916.t1 Bial10g01253 1253
10 12593701 12599935 - g86913.t1 Bial10g01256 1256
10 12600117 12605207 - g86912.t1 Bial10g01257 1257
10 12628153 12631682 - g86908.t1 Bial10g01261 1261
10 12635105 12637853 - g86907.t1 Bial10g01262 1262
12 57345554 57347273 - g35913.t1 Bial12g02714 2714
22 8130600 8131961 - g147189.t1 Bial22g00845 845
22 8165291 8176879 - g147185.t1 Bial22g00849 849
22 8200130 8203422 - g147182.t1 Bial22g00852 852
2 68218835 68220181 - h2tg000016l_1.g5036.t1 Cobi2g02210 2210
2 68496927 68497493 - h2tg000016l_1.g5027.t1 Cobi2g02219 2219
2 68510183 68512485 + h2tg000016l_1.g5026.t1 Cobi2g02220 2220
2 68513624 68515725 - h2tg000016l_1.g5025.t1 Cobi2g02221 2221
2 68528731 68531238 - h2tg000016l_1.g5024.t1 Cobi2g02222 2222
6 8434500 8436248 + h2tg000031l_1.g19363.t1 Cobi6g01050 1050
4 114508529 114509920 - h1tg000180l.g132118.t1 Dapi4g01804 1804
4 114656842 114657509 - h1tg000180l.g132125.t1 Dapi4g01811 1811
4 114702688 114706099 - h1tg000180l.g132127.t1 Dapi4g01813 1813
4 114724220 114727146 - h1tg000180l.g132128.t1 Dapi4g01814 1814
20 105724785 105726176 - h1tg000033l.g91457.t1 Dapi20g01741 1741
20 105864528 105865195 - h1tg000033l.g91464.t1 Dapi20g01748 1748
20 105921695 105925104 - h1tg000033l.g91466.t1 Dapi20g01750 1750
20 105949536 105952427 - h1tg000033l.g91467.t1 Dapi20g01751 1751
31 100898564 100900592 - h2tg000063l.g12122.t1 Dapi31g02037 2037
3 24852259 24855677 + FliAMIRv0_Chr03g0081641 Fli3g00895 895
3 25060330 25062172 + FliAMIRv0_Chr03g0081701 Fli3g00901 901
3 25061841 25065878 - FliAMIRv0_Chr03g0081711 Fli3g00902 902
3 25147054 25147841 + FliAMIRv0_Chr03g0081721 Fli3g00903 903
3 25165882 25172007 + FliAMIRv0_Chr03g0081761 Fli3g00907 907
3 25322945 25325973 + FliAMIRv0_Chr03g0081821 Fli3g00913 913
3 25364272 25365480 + FliAMIRv0_Chr03g0081851 Fli3g00916 916
18 64900245 64908918 - FraAMIRv0_Chr18g0358951 Fra18g01698 1698
18 64921049 64921843 - FraAMIRv0_Chr18g0358961 Fra18g01699 1699
18 64935239 64937071 - FraAMIRv0_Chr18g0358981 Fra18g01701 1701
18 64993768 64997223 - FraAMIRv0_Chr18g0358991 Fra18g01702 1702
18 66196913 66199065 - FraAMIRv0_Chr18g0359671 Fra18g01770 1770
14 19658761 19660242 - FroAMIRv0_Chr14g0253701 Fro14g01216 1216
14 19676486 19679518 - FroAMIRv0_Chr14g0253731 Fro14g01219 1219
14 19715128 19721488 - FroAMIRv0_Chr14g0253771 Fro14g01223 1223
14 19737352 19738144 - FroAMIRv0_Chr14g0253781 Fro14g01224 1224
14 19746377 19749271 + FroAMIRv0_Chr14g0253791 Fro14g01225 1225
14 19749735 19751550 - FroAMIRv0_Chr14g0253801 Fro14g01226 1226
14 19758637 19761070 - FroAMIRv0_Chr14g0253811 Fro14g01227 1227
1 59094564 59096054 - FsoAMIRv0_Chr01g0020051 Fso1g02006 2006
1 59119140 59122168 - FsoAMIRv0_Chr01g0020071 Fso1g02008 2008
1 59185099 59193862 - FsoAMIRv0_Chr01g0020161 Fso1g02017 2017
1 59204262 59205048 - FsoAMIRv0_Chr01g0020171 Fso1g02018 2018
1 59252901 59255822 + FsoAMIRv0_Chr01g0020181 Fso1g02019 2019
1 59256279 59258117 - FsoAMIRv0_Chr01g0020191 Fso1g02020 2020
1 59300202 59303657 - FsoAMIRv0_Chr01g0020221 Fso1g02023 2023
2 16229595 16233063 + FtrAMIRv0_Chr02g0037201 Ftr2g00853 853
2 16448346 16449148 + FtrAMIRv0_Chr02g0037281 Ftr2g00861 861
2 16507118 16507615 + FtrAMIRv0_Chr02g0037291 Ftr2g00862 862
2 16738047 16739555 + FtrAMIRv0_Chr02g0037341 Ftr2g00867 867
1 766962 768137 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000251 Hean1g00021 21
1 768130 768369 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000261 Hean1g00022 22
1 777757 781573 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000271 Hean1g00023 23
1 918357 919490 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000281 Hean1g00024 24
1 928792 930565 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000291 Hean1g00025 25
1 939046 947225 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000301 Hean1g00026 26
1 953215 954264 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000311 Hean1g00027 27
1 1018072 1022011 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000321 Hean1g00028 28
1 1021835 1024066 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000331 Hean1g00029 29
1 1028530 1031868 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000341 Hean1g00030 30
11 113840287 113843643 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0496201 Hean11g02538 2538
1 1174859 1175605 - >Htub.h1tg002714l.g236.t1 Hetu1g00016 16
1 1328361 1329009 - >Htub.h1tg002714l.g227.t1 Hetu1g00025 25
1 1365438 1367164 - >Htub.h1tg002714l.g225.t1 Hetu1g00027 27
1 1372332 1376238 - >Htub.h1tg002714l.g224.t1 Hetu1g00028 28
2 837184 837930 - >Htub.h1tg004339l.g198.t1 Hetu2g00020 20
2 953783 954176 - >Htub.h1tg004339l.g189.t1 Hetu2g00028 28
2 979371 981200 - >Htub.h1tg004339l.g187.t1 Hetu2g00030 30
2 986473 991560 - >Htub.h1tg004339l.g186.t1 Hetu2g00031 31
3 1045968 1046714 - >Htub.h1tg000837l.g128.t1 Hetu3g00017 17
3 1146743 1147062 - >Htub.h1tg000837l.g122.t1 Hetu3g00023 23
3 2511153 2512935 - >Htub.h1tg000837l.g99.t1 Hetu3g00046 46
3 2518116 2521200 - >Htub.h1tg000837l.g98.t1 Hetu3g00047 47
31 123329499 123331391 - >Htub.h1tg001293l.g237.t1 Hetu31g02158 2158
32 125371041 125372933 - >Htub.h1tg000110l.g18.t1 Hetu32g02164 2164
33 117752845 117754737 - >Htub.h1tg000866l.g469.t1 Hetu33g02092 2092
16 82513088 82514605 - KAD3338129.1 Mimi16g02059 2059
16 82594432 82598917 + KAD3338133.1 Mimi16g02063 2063
16 82599588 82601954 - KAD3338134.1 Mimi16g02064 2064
16 82614426 82616281 - KAD3338136.1 Mimi16g02066 2066
1 120309717 120311120 - KAI3829508.1 Smso1g03545 3545
1 120427164 120434215 - KAI3829514.1 Smso1g03551 3551
1 120463492 120464175 - KAI3829516.1 Smso1g03553 3553
1 120503877 120507581 - KAI3829519.1 Smso1g03556 3556
20 61092010 61094368 - KAI3742798.1 Smso20g01802 1802
28 14769470 14773478 + KAI3682804.1 Smso28g00524 524
28 14841807 14842464 + KAI3682806.1 Smso28g00526 526
28 14922869 14924272 + KAI3682807.1 Smso28g00527 527
1 128365129 128366601 - Streb.1G042460.1 Stre1g04246 4246
1 128405030 128412749 - Streb.1G042500.1 Stre1g04250 4250
1 128419775 128420722 - Streb.1G042510.1 Stre1g04251 4251
1 128451683 128454129 - Streb.1G042530.1 Stre1g04253 4253
1 128466298 128468682 - Streb.1G042550.1 Stre1g04255 4255
4 52661500 52664313 - >KAK1428073.1 Taer4g02290 2290
4 52774556 52780372 - >KAK1428081.1 Taer4g02299 2299
4 52793284 52793997 - >KAK1428082.1 Taer4g02300 2300
4 52948860 52951156 + >KAK1428089.1 Taer4g02307 2307
4 52952000 52953862 - >KAK1428090.1 Taer4g02308 2308
4 53014744 53017606 - >KAK1428092.1 Taer4g02310 2310
       
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