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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02222 ATGGGACTTTGCTGCTCCTCGCCTCGGGCTGATGAAGAAGAGACCAACATTCATACTAAGTTTGATGGCGGTAATGTGACTCTCATCACTACCAAAAATGCTTGGGACCAAAAGCTATCAGAAGCAAAGACACAAGGCAAAATAGTGATCGGCAACTTTAGTGCATCTTGGTGTGGTCCATGCAAGTCAATGGCGCCACACTACGTTGAGCTATCAGAGAAGTATCCTTCGCTTATGTTTTTGACGGTAGATGTCGACGAGTTAAAGGAGTTAAGCACACAAATGGATGTAAAAGCTACTCCAACATTCTTCTTCTTTAAAGATGGTCAACAATTTGATAAACTTGTGGGAGCAAACAAGCCTGAACTGCAGAAAAAAATAACCTCTGTTGTTGATTCACAATAA 405 41.73 MGLCCSSPRADEEETNIHTKFDGGNVTLITTKNAWDQKLSEAKTQGKIVIGNFSASWCGPCKSMAPHYVELSEKYPSLMFLTVDVDELKELSTQMDVKATPTFFFFKDGQQFDKLVGANKPELQKKITSVVDSQ 134
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02222 134 CDD TRX-family 39 127 - -
Cobi2g02222 134 SUPERFAMILY Thioredoxin-like 21 131 IPR036249 -
Cobi2g02222 134 ProSiteProfiles Thioredoxin domain profile. 20 132 IPR013766 -
Cobi2g02222 134 Pfam Thioredoxin 27 128 IPR013766 -
Cobi2g02222 134 PANTHER THIOREDOXIN 24 129 IPR050620 -
Cobi2g02222 134 PRINTS Thioredoxin family signature 96 107 - -
Cobi2g02222 134 PRINTS Thioredoxin family signature 57 66 - -
Cobi2g02222 134 PRINTS Thioredoxin family signature 49 57 - -
Cobi2g02222 134 Gene3D Glutaredoxin 1 134 - -
Cobi2g02222 134 FunFam Thioredoxin 23 132 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02222 K03671 thioredoxin
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Event-related genes

Select Gene_1 Gene_2 Event_name
377583 Cobi2g02222 Cobi6g01050
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1795176 Cobi Cobi2g02222 Cobi-Chr2:68528731 Cobi9g03115 Cobi-Chr9:74118405
1821076 Cobi Cobi4g00064 Cobi-Chr4:1082904 Cobi2g02222 Cobi-Chr2:68528731
1821432 Cobi Cobi4g01827 Cobi-Chr4:26274678 Cobi2g02222 Cobi-Chr2:68528731
1849449 Cobi Cobi2g02222 Cobi-Chr2:68528731 Cobi6g01050 Cobi-Chr6:8434500