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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00902 ATGGTCTACTCACAATTAACCGCTTTAATGGAAGACAAAACCTGCAAGTCACCCAAGAACTATTTAAACTTCCCTTTGAATCCTCCTGATGCCACATCAGATAATATTGAACTCGATTTTTCTGATACATTTGGTCCTCTATCGGCTCATGGAAATTCTGAAATTTCAAATGAAACTATATATGATGACCCGGTGGTCATCTGCAACCGATCACATTCTTTAGTGGGCCCCACGCCACACGTTAGCCACTTGCTAAATCTAAAGAAGCTAACCATATGTGAAACTGAGGAACTAGAGGATTTTAATGATGTGGCAGTTGTAGGAGTTGAGGAAAGTTGTGAGAAGGATGGGGACAAGTGTGTGCAGGTGCAGAGTGTTGGGCTTGAAGATTTTGAGGTTTTGAAAGTTGTGGGCCAGGGGGCGTTTGGGAAAGTATATCAAGTTAGAAAGAGAGATACTTTGGAAATATATGCAATGAAGGTTGTGAGGAAAGATAAGATTGTGGAGAAAAACCATGCTGAATATATGAAAGCTGAGAGGGATATCTTGACAAAGATTGATCATCCTTTCATAGTCCAACTCAGATATTCTTTCCAGACTAAATATAGACTTTACCTTGTTTTGGACTTTGTGAATGGAGGACATCTCTTTTTCCAGCTCTATCACCATGGACTGTTTCGAGAGGATCTGGCCCGTATTTATACAGCAGAGATTGTTTCAGCTGTTTCTCACCTTCATGCAAATGGCATAATGCATAGGGATCTTAAGCCTGAAAATATTCTACTTGATGTGGATGGCCATGCTTTGCTTACCGACTTTGGGCTAGCAAAAGAATTTGACAAAAATGCAAGATCAAATTCTTTATGTGGGACAGTAGAGTACATGTCACCTGAAATTATTCTTGGCAAGGGACATGATAAGGCTGCAGATTGGTGGAGTGTCGGGATCTTGTTGTTTGAGATGCTCACAGGACAGCCACCATTCCATGGAGGTAACCGAGATAAAGTACAAAAGAAGATAGTGAAGGATAAATTAAAGCTACCTGCATTTTTGACAAGCGAAGCACACTGCCTTCTGAAAGGGTTGCTGCAAAAGGATCCAAGCAAGAGGCTTGGAAACGGGTTAATGGGAAGTGATGAAATAAAGCATCACAAGTGGTTCAAGCCAATCAACTGGAAAAAACTAGACGCCCGAGAAATCCAGCCCAGTTTTCGGCCCGAAGTTGCAGGAAACCAATGCATTGCAAATTTTGAAAAACGTTGGACAGATATGCCACTATTGGACTCCCCTGCATCCAGCCCAGATGCTTCGGCAAACCTCTTTCAAGGATTTACTTATGTCAAGCCTGCAGCCTCTTTTCTCAGGAGAAACAGCCCGGTCTGCTAA 1386 42.06 MVYSQLTALMEDKTCKSPKNYLNFPLNPPDATSDNIELDFSDTFGPLSAHGNSEISNETIYDDPVVICNRSHSLVGPTPHVSHLLNLKKLTICETEELEDFNDVAVVGVEESCEKDGDKCVQVQSVGLEDFEVLKVVGQGAFGKVYQVRKRDTLEIYAMKVVRKDKIVEKNHAEYMKAERDILTKIDHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREDLARIYTAEIVSAVSHLHANGIMHRDLKPENILLDVDGHALLTDFGLAKEFDKNARSNSLCGTVEYMSPEIILGKGHDKAADWWSVGILLFEMLTGQPPFHGGNRDKVQKKIVKDKLKLPAFLTSEAHCLLKGLLQKDPSKRLGNGLMGSDEIKHHKWFKPINWKKLDAREIQPSFRPEVAGNQCIANFEKRWTDMPLLDSPASSPDASANLFQGFTYVKPAASFLRRNSPVC 461
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00902 461 Pfam Protein kinase domain 131 387 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fli3g00902 461 FunFam Non-specific serine-threonine protein kinase 211 406 - -
Fli3g00902 461 ProSitePatterns Serine-Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Fli3g00902 461 SMART serkin-6 131 387 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fli3g00902 461 SUPERFAMILY Protein kinase-like (PK-like) 128 450 IPR011009 -
Fli3g00902 461 ProSiteProfiles AGC-kinase C-terminal domain profile. 388 456 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fli3g00902 461 CDD STKc-AGC 137 387 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
Fli3g00902 461 PANTHER RIBOSOMAL PROTEIN S6 KINASE 119 452 - -
Fli3g00902 461 FunFam Non-specific serine-threonine protein kinase 128 232 - -
Fli3g00902 461 Gene3D Phosphorylase Kinase; domain 1 128 429 - -
Fli3g00902 461 ProSiteProfiles Protein kinase domain profile. 131 387 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fli3g00902 461 Gene3D Transferase(Phosphotransferase) domain 1 211 406 - -
Fli3g00902 461 SMART pkinase-C-6 388 448 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fli3g00902 461 ProSitePatterns Protein kinases ATP-binding region signature. 137 164 IPR017441 GO:0005524(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00902 K04688 ribosomal protein S6 kinase beta [EC:2.7.11.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2353406 Fli Fli11g01380 Fli-Chr11:40152684 Fli3g00902 Fli-Chr3:25061841
2370503 Fli Fli3g00902 Fli-Chr3:25061841 Fli6g02369 Fli-Chr6:91022724
2385315 Fli Fli15g00994 Fli-Chr15:37593245 Fli3g00902 Fli-Chr3:25061841
2385691 Fli Fli16g00793 Fli-Chr16:39492081 Fli3g00902 Fli-Chr3:25061841
2387560 Fli Fli2g00500 Fli-Chr2:9000412 Fli3g00902 Fli-Chr3:25061841
2396909 Fli Fli1g02164 Fli-Chr1:102064714 Fli3g00902 Fli-Chr3:25061841
2396938 Fli Fli1g02220 Fli-Chr1:103319375 Fli3g00902 Fli-Chr3:25061841
2414812 Fli Fli15g00197 Fli-Chr15:4396001 Fli3g00902 Fli-Chr3:25061841
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fli1g00260 . 11 449 AGC Kinase gene family AT3G14370 62.054 0.0 526.0
Fli1g00644 . 98 586 AGC Kinase gene family AT5G47750 72.414 0.0 725.0
Fli1g00900 . 13 92 AGC Kinase gene family AT1G51170 45.349 2.08e-10 53.9
Fli1g01548 WGDA 134 346 AGC Kinase gene family AT3G08730 22.979 7.48e-08 53.5
Fli1g02349 . 8 421 AGC Kinase gene family AT3G25250 59.091 8.83e-165 467.0
Fli1g02468 . 1 517 AGC Kinase gene family AT2G20470 77.842 0.0 838.0
Fli1g02907 . 4 438 AGC Kinase gene family AT2G34650 61.039 0.0 520.0
Fli2g00500 . 28 459 AGC Kinase gene family AT3G08720 56.726 2.11e-180 512.0
Fli2g01881 . 134 234 AGC Kinase gene family AT5G58140 44.545 3.92e-22 99.8
Fli2g01884 ACH 134 234 AGC Kinase gene family AT5G58140 44.545 4.32e-22 99.4
Fli2g01886 . 134 234 AGC Kinase gene family AT5G58140 44.545 3.92e-22 99.8
Fli2g01977 ACH 84 578 AGC Kinase gene family AT3G27580 68.102 0.0 676.0
Fli3g00042 . 140 379 AGC Kinase gene family AT3G08720 33.333 2.23e-36 142.0
Fli3g00213 . 18 996 AGC Kinase gene family AT3G45780 70.618 0.0 1375.0
Fli3g00902 . 1 468 AGC Kinase gene family AT3G08720 67.447 0.0 643.0
Fli3g02191 WGDA 590 949 AGC Kinase gene family AT2G36350 69.337 5.47e-179 519.0
Fli4g00093 . 40 263 AGC Kinase gene family AT5G04510 23.013 1.56e-09 59.3
Fli4g00278 . 18 97 AGC Kinase gene family AT3G45780 42.5 5.35e-07 43.9
Fli4g00581 . 135 259 AGC Kinase gene family AT5G58140 40.299 3.76e-21 96.3
Fli4g02300 . 1 538 AGC Kinase gene family AT4G14350 82.375 0.0 906.0
Fli6g01777 . 3 451 AGC Kinase gene family AT3G44610 63.383 0.0 536.0
Fli6g01778 . 474 896 AGC Kinase gene family AT3G52890 67.139 0.0 587.0
Fli6g02369 . 500 1130 AGC Kinase gene family AT5G62310 65.231 0.0 842.0
Fli7g00185 . 324 438 AGC Kinase gene family AT2G34650 53.043 1.46e-32 115.0
Fli8g00662 . 124 215 AGC Kinase gene family AT3G08720 32.609 3.37e-08 47.0
Fli8g01130 . 85 586 AGC Kinase gene family AT5G47750 81.657 0.0 831.0
Fli8g01295 . 124 204 AGC Kinase gene family AT3G08720 33.333 3.13e-07 44.3
Fli9g00799 . 18 996 AGC Kinase gene family AT3G45780 67.907 0.0 1332.0
Fli9g02001 . 380 934 AGC Kinase gene family AT3G52890 60.215 0.0 656.0
Fli9g02011 WGDA 381 934 AGC Kinase gene family AT3G52890 60.503 0.0 654.0
Fli10g00138 . 9 193 AGC Kinase gene family AT2G26700 56.25 1.86e-61 197.0
Fli10g00409 . 4 455 AGC Kinase gene family AT4G33080 82.522 0.0 774.0
Fli11g00166 . 17 404 AGC Kinase gene family AT1G51170 56.853 1.70e-157 447.0
Fli11g00321 ACH 134 346 AGC Kinase gene family AT3G08730 24.255 5.14e-08 54.3
Fli11g01380 . 135 379 AGC Kinase gene family AT3G08720 38.462 6.47e-47 174.0
Fli11g01648 . 395 991 AGC Kinase gene family AT1G45160 59.308 0.0 729.0
Fli11g01653 . 15 297 AGC Kinase gene family AT1G45160 39.661 1.89e-60 206.0
Fli12g01744 . 124 201 AGC Kinase gene family AT3G08720 34.615 5.14e-09 48.9
Fli13g00380 . 71 451 AGC Kinase gene family AT3G44610 56.397 4.29e-152 437.0
Fli13g00538 ACH 217 391 AGC Kinase gene family AT1G51170 61.143 1.86e-76 233.0
Fli13g00539 . 16 88 AGC Kinase gene family AT3G20830 53.425 8.83e-17 71.2
Fli13g00645 ACH 98 586 AGC Kinase gene family AT5G47750 66.869 0.0 649.0
Fli14g00307 . 73 765 AGC Kinase gene family AT2G44830 64.356 0.0 851.0
Fli14g00900 . 9 237 AGC Kinase gene family AT4G13000 58.468 9.31e-86 258.0
Fli14g01213 . 135 233 AGC Kinase gene family AT5G58140 44.444 2.09e-20 94.0
Fli15g00994 . 1 445 AGC Kinase gene family AT3G08720 67.035 0.0 607.0
Fli16g00793 . 28 181 AGC Kinase gene family AT3G08720 32.335 8.96e-22 90.1
Fli17g01299 ACH 13 396 AGC Kinase gene family AT1G51170 55.243 2.24e-142 409.0
Fli18g00378 . 135 233 AGC Kinase gene family AT5G58140 44.444 7.36e-21 95.5
Fli18g01500 . 86 765 AGC Kinase gene family AT2G44830 65.507 0.0 856.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fli Pkinase 9.2e-74 CL0016 PK AGC-Pl