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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro14g01227 ATGAGACTCTGCTGCTTCTCCTCGACTCCGGTTGATGAAGATGAGCCTGACAGCCATCCTGAGTTTGCAGGAGGTAATGTGACTCTGATTACTACCAAGAATGCTTGGGACCAAAAGCTGTCAGAAGCAAAGATTCAAGGCAAAGTAGTGATTGCCAACTTCAGTGCAACTTGGTGTGGTCCATGCAAATCAATTGCACCACACTATGTTGAGCTATCAGAGAAGTATCCTTCTCTTATGTTCCTGACCATCGACGTTGATGAGTTAACGGAGTTTAGCACAGAAATGGATGTAAAAGCTACTCCAACATTCTTCTTCTTTAGAGACGGTAAACAGATTGATAAACTTGTGGGAGCCAACAAGCCTGAACTGCAGAAAAAGATAACCACCATTGTTGATTCACAGGTCCCAACTGGTCAGAAATAA 426 43.43 MRLCCFSSTPVDEDEPDSHPEFAGGNVTLITTKNAWDQKLSEAKIQGKVVIANFSATWCGPCKSIAPHYVELSEKYPSLMFLTIDVDELTEFSTEMDVKATPTFFFFRDGKQIDKLVGANKPELQKKITTIVDSQVPTGQK 141
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro14g01227 141 PANTHER THIOREDOXIN 25 130 IPR050620 -
Fro14g01227 141 PRINTS Thioredoxin family signature 97 108 - -
Fro14g01227 141 PRINTS Thioredoxin family signature 58 67 - -
Fro14g01227 141 PRINTS Thioredoxin family signature 50 58 - -
Fro14g01227 141 FunFam Thioredoxin 24 133 - -
Fro14g01227 141 ProSiteProfiles Thioredoxin domain profile. 13 133 IPR013766 -
Fro14g01227 141 CDD TRX-family 40 128 - -
Fro14g01227 141 Pfam Thioredoxin 28 129 IPR013766 -
Fro14g01227 141 SUPERFAMILY Thioredoxin-like 23 131 IPR036249 -
Fro14g01227 141 ProSitePatterns Thioredoxin family active site. 51 69 IPR017937 -
Fro14g01227 141 Gene3D Glutaredoxin 3 139 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro14g01227 K03671 thioredoxin
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Event-related genes

Select Gene_1 Gene_2 Event_name
396078 Fro13g01321 Fro14g01227
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2519627 Fro Fro12g01713 Fro-Chr12:22687145 Fro14g01227 Fro-Chr14:19758637
2522687 Fro Fro14g01227 Fro-Chr14:19758637 Fro15g01627 Fro-Chr15:30986160
2563003 Fro Fro13g01321 Fro-Chr13:22765144 Fro14g01227 Fro-Chr14:19758637