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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03553 ATGCTAACGGTTCAATCTCCGGCCACCGGAAACCACCTCGCTCGGCCAAAAACCGGCCGCCGGCCTCTCCAACCTATCAGATCCCCAACCAATCTACCACCTCCACCGATCAACAACAGCTTCCAAAAGCCACATCTAAAGCACGGATCCATCGAGATCTCCGAAGATTCCAACAAGGAGAATCCAAATCCAAATCCAAATCCGATTCAGAATGATAAAGTAAATCATACTTCTATTTTAATCTCCGATGTTGCCGCTGCTCCTGTGCAGATCGAGCAATTTGAAGTCTCGTTGGCGGATGAGCTGAGCGCGATCCGAAAAAAGATGGAGCGGTTGAGGGCGGATAAAGAGAGAACGGAGAAGATGCTGAGAGAGAGGGAAATAATGATGGAGATGAAGGAGCTCGATCGGAGAGGTGAGATCCAGAAGGTGCTCGAGATTGAAGTTGATCGGCTTTATCGGTTGAACGAGCTCCGATCGTTATGCAATAGGATATTGCCGATTAGGTCGTTGAGAGAGAAGGAGCAAGAGAAGATTAAACCGGATAAATTAAAGGTAGAAGAAGGAGAGGAAAAGAAGGGTCAAGATTCGTTGTGA 597 47.57 MLTVQSPATGNHLARPKTGRRPLQPIRSPTNLPPPPINNSFQKPHLKHGSIEISEDSNKENPNPNPNPIQNDKVNHTSILISDVAAAPVQIEQFEVSLADELSAIRKKMERLRADKERTEKMLREREIMMEMKELDRRGEIQKVLEIEVDRLYRLNELRSLCNRILPIRSLREKEQEKIKPDKLKVEEGEEKKGQDSL 198
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03553 198 Coils Coil 99 129 - -
Smso1g03553 198 MobiDBLite consensus disorder prediction 56 73 - -
Smso1g03553 198 MobiDBLite consensus disorder prediction 1 73 - -
Smso1g03553 198 PANTHER MYELIN TRANSCRIPTION FACTOR 1 194 - -
Smso1g03553 198 MobiDBLite consensus disorder prediction 175 198 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03553 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
337964 Smso28g00526 Smso1g03553
346422 Smso20g01801 Smso1g03553
357523 Smso1g03553 Smso28g00526
429013 Smso1g03553 Smso20g01801
429014 Smso1g03553 Smso28g00526
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4967704 Smso Smso1g03553 Smso-Chr1:120463492 Smso25g00096 Smso-Chr25:2063808
5025334 Smso Smso1g03553 Smso-Chr1:120463492 Smso20g01801 Smso-Chr20:61083958
5027935 Smso Smso1g03553 Smso-Chr1:120463492 Smso28g00526 Smso-Chr28:14841807
5028286 Smso Smso1g03553 Smso-Chr1:120463492 Smso29g01571 Smso-Chr29:42722629