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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
  The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00031 Cobi2g02224 Bial10g01263 Bial22g00854 Dapi4g01815 Dapi20g01752 Hetu1g00030 Hetu2g00032 Hetu3g00048 Amtr12g00253 Smso1g03558 Smso28g00523 Taer4g02313 Fro14g01228 Fso1g02024 . Fra18g01705 Fli3g00894 Stre1g04256 Mimi16g02067 . . . . . . . . . . . . . . . . . . . .
Hean1g00032 Cobi2g02225 Bial10g01264 Bial22g00855 Dapi4g01816 Dapi20g01753 Hetu1g00031 Hetu2g00033 Hetu3g00049 Amtr12g00254 Smso1g03559 . Taer4g02314 Fro14g01229 Fso1g02025 Ftr2g00851 Fra18g01706 Fli3g00893 Stre1g04257 Mimi16g02068 . . . . . . . . . . . . . . . . . . . .
Hean1g00033 . . . . . . . . . . Smso28g00522 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00034 Cobi2g02227 Bial10g01265 Bial22g00856 Dapi4g01818 Dapi20g01755 Hetu1g00032 Hetu2g00034 Hetu3g00051 Amtr12g00261 Smso1g03563 . Taer4g02316 Fro14g01233 Fso1g02028 Ftr2g00838 Fra18g01709 Fli3g00887 Stre1g04259 Mimi16g02069 . . . . . . . . . . . . . . . . . . . .
Hean1g00035 Cobi2g02228 . . . . . . . Amtr12g00262 . . Taer4g02317 Fro14g01235 Fso1g02029 Ftr2g00837 Fra18g01710 Fli3g00885 Stre1g04260 Mimi16g02070 . . . . . . . . . . . . . . . . . . . .
Hean1g00036 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00037 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00038 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00039 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
12 7871687 7875844 + AtrifAMIRv0_Chr12g0719851 Amtr12g00253 253
12 7877646 7880998 - AtrifAMIRv0_Chr12g0719861 Amtr12g00254 254
12 7980091 7985157 + AtrifAMIRv0_Chr12g0719931 Amtr12g00261 261
12 7987071 7990000 - AtrifAMIRv0_Chr12g0719941 Amtr12g00262 262
10 12639491 12642736 + g86906.t1 Bial10g01263 1263
10 12643102 12645892 - g86905.t1 Bial10g01264 1264
10 12661371 12663845 + g86904.t1 Bial10g01265 1265
22 8219433 8222114 + g147180.t1 Bial22g00854 854
22 8222603 8225297 - g147179.t1 Bial22g00855 855
22 8232543 8237537 + g147178.t1 Bial22g00856 856
2 68615984 68619798 + h2tg000016l_1.g5022.t1 Cobi2g02224 2224
2 68620361 68621564 - h2tg000016l_1.g5021.t1 Cobi2g02225 2225
2 68635679 68637463 + h2tg000016l_1.g5019.t1 Cobi2g02227 2227
2 68639296 68641025 - h2tg000016l_1.g5018.t1 Cobi2g02228 2228
4 114778838 114783618 + h1tg000180l.g132129.t1 Dapi4g01815 1815
4 114794652 114798412 - h1tg000180l.g132130.t1 Dapi4g01816 1816
4 114817834 114822528 + h1tg000180l.g132132.t1 Dapi4g01818 1818
20 106054954 106058594 + h1tg000033l.g91468.t1 Dapi20g01752 1752
20 106119424 106123037 - h1tg000033l.g91469.t1 Dapi20g01753 1753
20 106151759 106156395 + h1tg000033l.g91471.t1 Dapi20g01755 1755
3 24533271 24535791 + FliAMIRv0_Chr03g0081541 Fli3g00885 885
3 24596370 24602354 - FliAMIRv0_Chr03g0081561 Fli3g00887 887
3 24822207 24825154 + FliAMIRv0_Chr03g0081621 Fli3g00893 893
3 24832615 24836265 - FliAMIRv0_Chr03g0081631 Fli3g00894 894
18 65022429 65025931 + FraAMIRv0_Chr18g0359021 Fra18g01705 1705
18 65030148 65033086 - FraAMIRv0_Chr18g0359031 Fra18g01706 1706
18 65102124 65107155 + FraAMIRv0_Chr18g0359061 Fra18g01709 1709
18 65112199 65114298 - FraAMIRv0_Chr18g0359071 Fra18g01710 1710
14 19774089 19777562 + FroAMIRv0_Chr14g0253821 Fro14g01228 1228
14 19784931 19788767 - FroAMIRv0_Chr14g0253831 Fro14g01229 1229
14 19845840 19850999 + FroAMIRv0_Chr14g0253871 Fro14g01233 1233
14 19860877 19865872 - FroAMIRv0_Chr14g0253891 Fro14g01235 1235
1 59353553 59353807 + FsoAMIRv0_Chr01g0020231 Fso1g02024 2024
1 59383175 59386304 - FsoAMIRv0_Chr01g0020241 Fso1g02025 2025
1 59437879 59442955 + FsoAMIRv0_Chr01g0020271 Fso1g02028 2028
1 59449839 59452380 - FsoAMIRv0_Chr01g0020281 Fso1g02029 2029
2 15848281 15850409 + FtrAMIRv0_Chr02g0037041 Ftr2g00837 837
2 15855327 15861036 - FtrAMIRv0_Chr02g0037051 Ftr2g00838 838
2 16111603 16113118 + FtrAMIRv0_Chr02g0037181 Ftr2g00851 851
1 1037038 1041523 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000351 Hean1g00031 31
1 1042503 1046378 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000361 Hean1g00032 32
1 1043747 1044545 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000371 Hean1g00033 33
1 1058058 1062977 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000381 Hean1g00034 34
1 1066222 1071322 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000401 Hean1g00035 35
1 1071324 1071920 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000411 Hean1g00036 36
1 1183718 1190892 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000421 Hean1g00037 37
1 1192603 1195212 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000431 Hean1g00038 38
1 1199584 1201868 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000441 Hean1g00039 39
1 1199662 1200425 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000451 Hean1g00040 40
1 1423423 1426315 + >Htub.h1tg002714l.g222.t1 Hetu1g00030 30
1 1426937 1430113 - >Htub.h1tg002714l.g221.t1 Hetu1g00031 31
1 1481667 1483912 + >Htub.h1tg002714l.g220.t1 Hetu1g00032 32
2 1017754 1020692 + >Htub.h1tg004339l.g185.t1 Hetu2g00032 32
2 1021354 1024440 - >Htub.h1tg004339l.g184.t1 Hetu2g00033 33
2 1086773 1090342 + >Htub.h1tg004339l.g183.t1 Hetu2g00034 34
3 2582214 2585107 + >Htub.h1tg000837l.g97.t1 Hetu3g00048 48
3 2585777 2589311 - >Htub.h1tg000837l.g96.t1 Hetu3g00049 49
3 2609331 2613103 + >Htub.h1tg000837l.g94.t1 Hetu3g00051 51
16 82622364 82626540 + KAD3338137.1 Mimi16g02067 2067
16 82631769 82634890 - KAD3338138.1 Mimi16g02068 2068
16 82655594 82660335 + KAD3338139.1 Mimi16g02069 2069
16 82662193 82664466 - KAD3338140.1 Mimi16g02070 2070
1 120522056 120525278 + KAI3829521.1 Smso1g03558 3558
1 120535736 120538346 - KAI3829522.1 Smso1g03559 3559
1 120592667 120599854 + KAI3829526.1 Smso1g03563 3563
28 14712584 14712889 - KAI3682802.1 Smso28g00522 522
28 14738460 14742469 - KAI3682803.1 Smso28g00523 523
1 128476116 128480505 + Streb.1G042560.1 Stre1g04256 4256
1 128482001 128484639 - Streb.1G042570.1 Stre1g04257 4257
1 128500354 128503318 + Streb.1G042590.1 Stre1g04259 4259
1 128512398 128514141 - Streb.1G042600.1 Stre1g04260 4260
4 53033613 53037577 + >KAK1428095.1 Taer4g02313 2313
4 53038395 53040055 - >KAK1428096.1 Taer4g02314 2314
4 53050256 53055106 + >KAK1428098.1 Taer4g02316 2316
4 53057757 53059847 - >KAK1428099.1 Taer4g02317 2317
       
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