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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02069 ATGCAGACTTCATCATCTCCCGCATTATGTCGTATCGTTCCTGTAGATTGCATCTTCAATTGTTCACATCAGCTGCCGTACCCTTCCGGTTTCAATTTGGGGTTACCCACAGGGAGCAGAAAGCTCAAGCTTTCTAGGCTGCAGGCTGGGTTTTGGGAATCCATTAGATCTGGGTTAATAAAGAACAACTCTACACAGGTCATAGAGCCATCTTCTAGTATCCAAGAAGATGAAGAGCCTATTCTAGAGGAATTTGTACTTGTTGAAAAAACACTACCAGATGGAACCATTGAACAAATTATATTTTCTTCCGGTGCAGAAGTCGATGTATATGATCTCCAAGCTTTGTGTGATAAGGTCGGTTGGCCTAGAAGACCATTATCAAAGCTGGCTGCTGCACTGAGAAATAGCTACATGGTAGCAACGTTGCATTCCATAAAGAAATCTGCCAAAGAAGAATTAACAGAACCCATTAATGAAAAGAAGCTCATTGGCATGGCTCGTGCCACATCAGATCATGCATTCAATGCAACGATATGGGATGTCCTTGTAGATCCTAGCTACCAGGGACAAGGTCTTGGAAAAGCTCTCATTGAGAAGCTTATTAGAGCTCTACTCCAGAGGGACATTGGCAACATATCACTATTTGCAGACAGTAAAGTTGTGGAATTTTATAGAAATCTAGGATTTGAACCCGACCCGGAGGGCATCAAAGGTATGTTTTGGTACCCTAGGTTTTAG 741 42.51 MQTSSSPALCRIVPVDCIFNCSHQLPYPSGFNLGLPTGSRKLKLSRLQAGFWESIRSGLIKNNSTQVIEPSSSIQEDEEPILEEFVLVEKTLPDGTIEQIIFSSGAEVDVYDLQALCDKVGWPRRPLSKLAAALRNSYMVATLHSIKKSAKEELTEPINEKKLIGMARATSDHAFNATIWDVLVDPSYQGQGLGKALIEKLIRALLQRDIGNISLFADSKVVEFYRNLGFEPDPEGIKGMFWYPRF 246
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02069 246 Gene3D - 104 243 - -
Mimi16g02069 246 FunFam Putative acetyltransferase NSI 104 243 - -
Mimi16g02069 246 PANTHER ACYL-COA N-ACYLTRANSFERASE 14 244 IPR045039 GO:0005737(PANTHER)|GO:0008080(InterPro)|GO:0008080(PANTHER)
Mimi16g02069 246 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 109 236 IPR016181 -
Mimi16g02069 246 Pfam Acetyltransferase (GNAT) family 159 230 IPR000182 GO:0016747(InterPro)
Mimi16g02069 246 CDD NAT-SF 159 215 - -
Mimi16g02069 246 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 100 246 IPR000182 GO:0016747(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02069 K22450 aralkylamine N-acetyltransferase [EC:2.3.1.87]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4008941 Mimi Mimi16g02069 Mimi-Chr16:82655594 Mimi18g01408 Mimi-Chr18:42257572
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Mimi Acetyltransf_1 1.5e-14 CL0257 TR GNAT