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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Taer4g02317 ATGGCATTTGTTAAACGCAACTGGTCAATTCACGATTTCGAGATCGGAAAACCTCTCGGAAAAGGAAAATTCGGCCGTGTTTACCTCGCCCGTGAAGCAAAGAGCAAGTATATAGTCGCGTTGAAAGTGATATTCAAAGAGCAGATTGAAAAGTACAGGCTGCAACATCAGTTGAAGAGAGAGATGGCGATTCAAACGAGCCTTCGGCATCCGCATGTTCTGAGACTGTATGGTTGGTTTCATGATGAAGATAGGATCTTTTTCATTTTGGAGTATGCTCATGGAGGTGAACTGTATGGAGAGCTTCGTAGATCTGGTTGTTTTTCGGAGAAACAAGCTGCCACTTACATTGCTAGCCTTACACACGCATTAGCATACTGTCATGAGAATCATGTTATTCATCGGGATATCAAGCCAGAGAACTTGTTGCTTGATCACGAGGGTCGATTGAAGATAGCTGATTTTGGTTGGTCTGTTCAGTCAAAAAATAAGAGGCACACGATGTGTGGAACATTAGACTATCTAGCACCAGAGATGGTGGAAAACAAAGCTCATGATTATGCAGTTGATAATTGGACTTTAGGTGTTTTATGTTATGAATTTCTCTATGGTGTCCCTCCTTTTGAGGCAGACAGTCAAGCAGATACATTTCGAAGGATTATGAAAGTTGACCTCACCTTTCCTTCTAAACCTCATGTTTCGGATGACGCTAAAGTTCTCATCACACAACTTTTGGTGAAAGACTCTGCAAAAAGGCTCTCTCTTGACAAGATTTTGAAGCATCCTTGGATCATCATGAACGCCGATCCCAATGGTACTTTCTCTAAATAA 831 41.64 MAFVKRNWSIHDFEIGKPLGKGKFGRVYLAREAKSKYIVALKVIFKEQIEKYRLQHQLKREMAIQTSLRHPHVLRLYGWFHDEDRIFFILEYAHGGELYGELRRSGCFSEKQAATYIASLTHALAYCHENHVIHRDIKPENLLLDHEGRLKIADFGWSVQSKNKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGVLCYEFLYGVPPFEADSQADTFRRIMKVDLTFPSKPHVSDDAKVLITQLLVKDSAKRLSLDKILKHPWIIMNADPNGTFSK* 277
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Taer4g02317 276 ProSitePatterns Serine-Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Taer4g02317 276 Pfam Protein kinase domain 13 264 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Taer4g02317 276 SUPERFAMILY Protein kinase-like (PK-like) 8 266 IPR011009 -
Taer4g02317 276 FunFam Aurora kinase A 5 96 - -
Taer4g02317 276 ProSitePatterns Protein kinases ATP-binding region signature. 19 46 IPR017441 GO:0005524(InterPro)
Taer4g02317 276 SMART serkin-6 13 264 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Taer4g02317 276 ProSiteProfiles Protein kinase domain profile. 13 264 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Taer4g02317 276 PIRSF ILK 4 267 - -
Taer4g02317 276 CDD STKc-Aurora 12 264 - -
Taer4g02317 276 FunFam Serine-threonine-protein kinase ark1 5 276 - -
Taer4g02317 276 Gene3D Transferase(Phosphotransferase) domain 1 96 273 - -
Taer4g02317 276 Gene3D Phosphorylase Kinase; domain 1 2 95 - -
Taer4g02317 276 PANTHER SERINE-THREONINE-PROTEIN KINASE IAL-RELATED 5 273 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Taer4g02317 K08850 aurora kinase, other [EC:2.7.11.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5247290 Taer Taer1g04045 Taer-Chr1:40274362 Taer4g02317 Taer-Chr4:53057757
5254773 Taer Taer4g02317 Taer-Chr4:53057757 Taer5g00236 Taer-Chr5:2078652
5272109 Taer Taer4g02317 Taer-Chr4:53057757 Taer11g02354 Taer-Chr11:35128588
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Taer1g00180 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 41.544 1.19e-65 210.0
Taer1g00310 . 14 410 CBL-interacting serine-threonine protein kinases family AT2G30360 55.473 1.16e-151 435.0
Taer1g00429 . 1 445 CBL-interacting serine-threonine protein kinases family AT5G35410 71.365 0.0 667.0
Taer1g00906 . 6 271 CBL-interacting serine-threonine protein kinases family AT5G35410 33.577 2.92e-45 160.0
Taer1g01232 . 8 288 CBL-interacting serine-threonine protein kinases family AT4G24400 39.661 6.71e-63 204.0
Taer1g02133 . 12 439 CBL-interacting serine-threonine protein kinases family AT4G30960 74.651 0.0 631.0
Taer1g02558 . 5 439 CBL-interacting serine-threonine protein kinases family AT5G10930 64.56 0.0 602.0
Taer1g02806 . 1 451 CBL-interacting serine-threonine protein kinases family AT5G58380 65.044 0.0 618.0
Taer1g04045 WGDA 24 302 CBL-interacting serine-threonine protein kinases family AT5G25110 36.17 1.34e-55 185.0
Taer1g04716 . 55 270 CBL-interacting serine-threonine protein kinases family AT2G26980 53.704 6.13e-79 248.0
Taer1g04796 . 30 309 CBL-interacting serine-threonine protein kinases family AT1G30270 39.274 4.13e-66 215.0
Taer1g05285 . 8 280 CBL-interacting serine-threonine protein kinases family AT4G24400 44.014 5.53e-70 224.0
Taer1g05728 . 42 310 CBL-interacting serine-threonine protein kinases family AT5G25110 43.972 1.24e-68 221.0
Taer1g06180 . 32 272 CBL-interacting serine-threonine protein kinases family AT2G26980 42.292 8.59e-62 200.0
Taer1g06182 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 41.912 5.93e-67 214.0
Taer1g06581 . 198 366 CBL-interacting serine-threonine protein kinases family AT2G30360 36.264 5.41e-25 98.6
Taer1g07709 . 24 154 CBL-interacting serine-threonine protein kinases family AT5G25110 30.935 8.89e-16 71.6
Taer2g02210 . 30 309 CBL-interacting serine-threonine protein kinases family AT1G30270 40.264 7.62e-69 222.0
Taer2g03211 . 38 470 CBL-interacting serine-threonine protein kinases family AT5G25110 69.655 0.0 644.0
Taer3g02119 . 33 301 CBL-interacting serine-threonine protein kinases family AT5G25110 42.908 3.55e-67 218.0
Taer3g02486 . 1 441 CBL-interacting serine-threonine protein kinases family AT5G10930 63.901 0.0 582.0
Taer3g03325 . 8 291 CBL-interacting serine-threonine protein kinases family AT4G24400 42.373 1.92e-67 217.0
Taer4g00492 . 13 335 CBL-interacting serine-threonine protein kinases family AT2G26980 37.572 2.55e-68 217.0
Taer4g00541 . 5 489 CBL-interacting serine-threonine protein kinases family AT4G18700 75.309 0.0 744.0
Taer4g00570 . 1 418 CBL-interacting serine-threonine protein kinases family AT2G30360 58.118 3.29e-167 477.0
Taer4g00572 . 1 444 CBL-interacting serine-threonine protein kinases family AT5G58380 52.252 1.06e-164 469.0
Taer4g00833 . 303 441 CBL-interacting serine-threonine protein kinases family AT4G30960 57.241 8.62e-41 139.0
Taer4g00948 . 1 453 CBL-interacting serine-threonine protein kinases family AT5G58380 61.758 0.0 578.0
Taer4g00949 . 17 422 CBL-interacting serine-threonine protein kinases family AT2G30360 59.459 2.18e-170 484.0
Taer4g01323 ACH 11 259 CBL-interacting serine-threonine protein kinases family AT5G57630 28.105 5.08e-13 67.8
Taer4g02235 . 8 428 CBL-interacting serine-threonine protein kinases family AT5G01820 62.118 6.19e-174 492.0
Taer4g02317 . 12 277 CBL-interacting serine-threonine protein kinases family AT5G10930 39.777 7.07e-62 200.0
Taer4g02838 . 13 422 CBL-interacting serine-threonine protein kinases family AT2G30360 63.923 0.0 542.0
Taer4g02842 . 1 453 CBL-interacting serine-threonine protein kinases family AT5G58380 63.516 0.0 595.0
Taer5g00236 . 28 457 CBL-interacting serine-threonine protein kinases family AT1G30270 85.814 0.0 782.0
Taer5g00813 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.362 2.54e-91 284.0
Taer5g01330 . 8 297 CBL-interacting serine-threonine protein kinases family AT4G24400 40.199 1.79e-66 215.0
Taer5g02330 . 2 425 CBL-interacting serine-threonine protein kinases family AT5G45820 66.741 0.0 613.0
Taer5g02428 . 11 281 CBL-interacting serine-threonine protein kinases family AT4G18700 27.483 3.49e-19 89.7
Taer6g00553 . 18 272 CBL-interacting serine-threonine protein kinases family AT2G30360 25.436 1.16e-15 79.7
Taer6g00652 . 6 459 CBL-interacting serine-threonine protein kinases family AT4G18700 72.247 0.0 684.0
Taer6g00653 . 2 410 CBL-interacting serine-threonine protein kinases family AT5G45820 58.427 0.0 527.0
Taer6g01174 . 19 277 CBL-interacting serine-threonine protein kinases family AT2G30360 38.202 6.67e-52 184.0
Taer6g01617 . 16 441 CBL-interacting serine-threonine protein kinases family AT4G30960 74.533 0.0 625.0
Taer6g02729 . 72 460 CBL-interacting serine-threonine protein kinases family AT1G30270 70.513 0.0 571.0
Taer7g00549 . 17 438 CBL-interacting serine-threonine protein kinases family AT4G30960 72.877 0.0 608.0
Taer7g02228 . 14 374 CBL-interacting serine-threonine protein kinases family AT4G14580 58.082 5.16e-146 421.0
Taer7g02432 . 4 308 CBL-interacting serine-threonine protein kinases family AT2G30360 38.05 6.11e-67 216.0
Taer7g02815 . 37 100 CBL-interacting serine-threonine protein kinases family AT5G35410 35.938 1.87e-11 58.2
Taer7g03545 . 130 189 CBL-interacting serine-threonine protein kinases family AT5G01810 54.545 3.16e-13 60.8
Taer9g00998 . 15 466 CBL-interacting serine-threonine protein kinases family AT4G18700 73.799 0.0 683.0
Taer9g01788 . 15 422 CBL-interacting serine-threonine protein kinases family AT2G30360 59.42 7.30e-177 499.0
Taer9g02230 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 49.805 1.29e-79 267.0
Taer10g02385 . 28 460 CBL-interacting serine-threonine protein kinases family AT1G30270 71.889 0.0 651.0
Taer11g00057 . 8 326 CBL-interacting serine-threonine protein kinases family AT4G24400 39.94 1.72e-67 216.0
Taer11g00647 . 55 270 CBL-interacting serine-threonine protein kinases family AT2G26980 53.704 2.18e-79 249.0
Taer11g01134 . 1 444 CBL-interacting serine-threonine protein kinases family AT3G17510 66.443 0.0 598.0
Taer11g02054 . 15 282 CBL-interacting serine-threonine protein kinases family AT4G18700 37.906 4.40e-50 181.0
Taer11g02354 WGDA 19 302 CBL-interacting serine-threonine protein kinases family AT5G25110 35.192 3.83e-55 184.0
Taer11g02858 . 8 288 CBL-interacting serine-threonine protein kinases family AT4G24400 43.243 1.66e-71 227.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Taer Pkinase 2e-74 CL0016 PK Aur