AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00887 ATGCAGACTTCATCTTCTCCAGCACTATGTGCTGTCGTTCCTGTTGATTGCATCTTCAATTCTTCGAATCAGCTACCGTATCCTTCAAGTTTCAATTTGGGGTTATCCACAGGGAGTAGAAAGCTCAAGCTTTCTAGGTTGCAGGCTGGATTTTGGGAGTCTATTAGATCTGGGTTAATAAAGAACAACTCTACACAGGTTATAGAGCCATCTTCTAGTTCCCAAGAAGATGAAGAGCCTCTTCCAGAAGAATTTGTACTCGTCGAAAAAACGCTACCAGATGGAACAATTGAACAAATTATTTTTTCTTCAGGTGCAGAAGTTGATGTATATGATCTCCAAGCTTTATGTGATAAGGTTGGATGGCCAAGAAGGCCACTATCAAAGCTAGCGGCTGCCTTGAGAAATAGCTACATGGTAGCAACATTGCATTCCGTAAAGAAAACTGCTGGACAAGAATTAACAGAACCGAATAATGAAAAGAAGCTCATTGGCATGGCTCGCGCCACCTCAGATCATGCATTCAATGCAACAATATGGGATGTCCTTGTAGATCCTAGCTACCAGGGGCAAGGACTTGGAAAAGCTCTAATTGAGAAGCTTATAAGAGCTCTACTTCAGAGGGACATTGGCAACATATCACTGTTCGCAGACAGTAAAGTTGTGGAATTTTATAGAAATCTAGGATTTGAACCCGACCCAGAGGGCATCAAAGCCCAGTGA 723 42.32 MQTSSSPALCAVVPVDCIFNSSNQLPYPSSFNLGLSTGSRKLKLSRLQAGFWESIRSGLIKNNSTQVIEPSSSSQEDEEPLPEEFVLVEKTLPDGTIEQIIFSSGAEVDVYDLQALCDKVGWPRRPLSKLAAALRNSYMVATLHSVKKTAGQELTEPNNEKKLIGMARATSDHAFNATIWDVLVDPSYQGQGLGKALIEKLIRALLQRDIGNISLFADSKVVEFYRNLGFEPDPEGIKAQ 240
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00887 240 Pfam Acetyltransferase (GNAT) family 159 230 IPR000182 GO:0016747(InterPro)
Fli3g00887 240 FunFam Putative acetyltransferase NSI 104 240 - -
Fli3g00887 240 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 100 240 IPR000182 GO:0016747(InterPro)
Fli3g00887 240 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 109 235 IPR016181 -
Fli3g00887 240 CDD NAT-SF 159 215 - -
Fli3g00887 240 Gene3D - 104 239 - -
Fli3g00887 240 PANTHER ACYL-COA N-ACYLTRANSFERASE 10 238 IPR045039 GO:0005737(PANTHER)|GO:0008080(PANTHER)|GO:0008080(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00887 K22450 aralkylamine N-acetyltransferase [EC:2.3.1.87]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2370492 Fli Fli3g00887 Fli-Chr3:24596370 Fli5g01650 Fli-Chr5:39726754
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fli Acetyltransf_1 1.9e-14 CL0257 TR GNAT