AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03558 ATGGAGCATGAAAAGAAGAAGAGAGGGAAGAAAAAGAAGAACAAGCAGGGAAAAACAAGTGTATCTGCTGGCGTTGGGGAATTGACTACAGAAAATAACAATCATGCAAATGTGGCAAATCAGAATCATCAGAACGTTAATTCTGATAGTTCGGATGTGCCGAAAAGGGGTCTGCAGCAAGCAGTTGTGGATTCAGATAGAGAGTCCATCAGTGGAGCTGAAACTTCCCGTTCAGTTGAGGCTGAGAAGTCCTATTGGTTAAACCGAGAGGCTTCCCTAGAACAAAAAATCAAAGAACTACAAGAGCAATTGGACATACATGTACAAAGGGAGGCTGATCTTGAGAGAAATATTTCACAATCACAGAAAGAAAGAAATTCATGGCATCATAAAGAGACTGAGCTCGAGGCAACAATTTCACAATTACAAACAGAAAAACGCGCTTGGCTTCAAAAAGAGGCTGATTGTGAAGAAAAATTGAATCGGTTGGTTGAAGAAACATCTACTCTGCGATCAATGGAGGCTTGCTTCGAAGAAAAACGTATCCAGATGGAAACAGAAAAGGTTAACTTGGCACAAAGAGAGAACTCTGCAGCAGAAACAATTGCATCTTTGATCAAGGACAATGCAAAATTACAAGCACAAGTGATCGAGCTGGAAACATCTTCAAATAATATTTCCCACCAAAATCAGCAGCTGAAAGAACATGTTTCTGATCTTCAGTCAAAGATTCAGGATCTTGAAAATTCTGTAGCTACCCATTTATCTTCTGAAAGGACAAAGAACGTTACTGCATACGAGGACATGAATTTACAGTTGGAATCTGCACAAGCACTTGTTGCAAAATTGCTTTCTGAAAATGATATTTTAGTTGAGAAGGTCAACGTCTTAAAAACCGAGCTTGACCAAAAGACTGCAACAACCCAATCATCTTCACCTATTAAACCCGTTGACCCGTTAGTCAAAAATCCCAAAGCTGCTGACATGGATGAAACTTCAACTACTGAAACTGATTCAATGCCTTCATCAGCTGAAACTGACACAGTCAGCAACGTGGGCCCATCAGATACACTTGTGAATCATATGCATTCAGAGGGTTCTGATTTGAATCAAATTTCTCGCGTAAGCATGGAGTCTGGAGAAATTGTGCAGATTTCATTAAACGAGATAGATGTCGCAGCTGCCACATCAGCAATCTATGTTCCCGAGGATGCCGACCCGGTGCCTCTCACAGACGCTCCGCTCATCGGTGCTCCATTCAGGTTTATATCGTTTGTTGCCAGATATGTGAGTGGGGCCGACTTGGTTCAGAAGTAA 1317 41.46 MEHEKKKRGKKKKNKQGKTSVSAGVGELTTENNNHANVANQNHQNVNSDSSDVPKRGLQQAVVDSDRESISGAETSRSVEAEKSYWLNREASLEQKIKELQEQLDIHVQREADLERNISQSQKERNSWHHKETELEATISQLQTEKRAWLQKEADCEEKLNRLVEETSTLRSMEACFEEKRIQMETEKVNLAQRENSAAETIASLIKDNAKLQAQVIELETSSNNISHQNQQLKEHVSDLQSKIQDLENSVATHLSSERTKNVTAYEDMNLQLESAQALVAKLLSENDILVEKVNVLKTELDQKTATTQSSSPIKPVDPLVKNPKAADMDETSTTETDSMPSSAETDTVSNVGPSDTLVNHMHSEGSDLNQISRVSMESGEIVQISLNEIDVAAATSAIYVPEDADPVPLTDAPLIGAPFRFISFVARYVSGADLVQK 438
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03558 438 MobiDBLite consensus disorder prediction 328 350 - -
Smso1g03558 438 Gene3D - 133 309 - -
Smso1g03558 438 MobiDBLite consensus disorder prediction 1 17 - -
Smso1g03558 438 Coils Coil 266 293 - -
Smso1g03558 438 MobiDBLite consensus disorder prediction 1 80 - -
Smso1g03558 438 MobiDBLite consensus disorder prediction 304 350 - -
Smso1g03558 438 MobiDBLite consensus disorder prediction 18 55 - -
Smso1g03558 438 Coils Coil 230 250 - -
Smso1g03558 438 Coils Coil 83 124 - -
Smso1g03558 438 Coils Coil 202 222 - -
Smso1g03558 438 Coils Coil 132 152 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03558 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
337966 Smso28g00523 Smso1g03558
357521 Smso1g03558 Smso28g00523
429017 Smso1g03558 Smso28g00523
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4967708 Smso Smso1g03558 Smso-Chr1:120522056 Smso5g00163 Smso-Chr5:2128926
5027938 Smso Smso1g03558 Smso-Chr1:120522056 Smso28g00523 Smso-Chr28:14738460