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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04260 ATGGCTTCTGAATCAATGAAACGAAACTGGTCGATCAACGATTTCGAGATCGGAAAACCTCTCGGAAAGGGGAAATTCGGCCGTGTTTATCTCGCCCGTGAAGTCAAGACCAAGTATATAGTCGCTTTGAAAGTGATCTTCAAAGAGCAGATTGAAAAGTACCGTCTGCAACACCAGCTGAAGCGAGAGATGGAGATTCAAACCAGCCTTCGTCATCCTCATGTTCTCCGACTGTACGGATGGTTTCACGATGAAGAAAGGATCTTTTTGATTTTGGAGTATGCTCATGGCGGTGAGCTTTATGGGAATCTTCGTAAATTGGGTCATTTCTCTGAGAAACAAGCTGCCACTTACATTGCTAGCCTTACACATGCATTAGCATACTGTCATGAGAAGCATGTTATTCATAGAGATATCAAACCGGAGAACTTGTTGCTTGATCACGATGGTCGATTGAAGATAGCTGATTTTGGGTGGTCAGTTCAGTCAAAAAACAAGAGGCATACAATGTGTGGAACATTAGATTATTTAGCACCAGAAATGGTTGAAAATAAAGCTTATGATTATGCAATTGATAATTGGACTTTAGGTGTTTTATGTTATGAATTTCTCTATGGTGATCCTCCTTTTGAGGCAGACAATCAAAAAGATACATTTAGAAGGATTATGAAGGTTGACCTCACATTTCCTGTTAACCCTCGTGTTTCTGATGAAGCTAAAGTTCTCATCACACAACTTTTGGTGAAAGATTCTTCAAAAAGGCTATCACTTGAGAAGATTTTAAAGCATCCTTGGATCATCAAGAATGCTGATCCTAATGGTACATATTCTAAATAG 837 39.43 MASESMKRNWSINDFEIGKPLGKGKFGRVYLAREVKTKYIVALKVIFKEQIEKYRLQHQLKREMEIQTSLRHPHVLRLYGWFHDEERIFLILEYAHGGELYGNLRKLGHFSEKQAATYIASLTHALAYCHEKHVIHRDIKPENLLLDHDGRLKIADFGWSVQSKNKRHTMCGTLDYLAPEMVENKAYDYAIDNWTLGVLCYEFLYGDPPFEADNQKDTFRRIMKVDLTFPVNPRVSDEAKVLITQLLVKDSSKRLSLEKILKHPWIIKNADPNGTYSK 278
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04260 278 PANTHER SERINE-THREONINE-PROTEIN KINASE IAL-RELATED 4 275 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
Stre1g04260 278 Gene3D Transferase(Phosphotransferase) domain 1 98 277 - -
Stre1g04260 278 PIRSF ILK 2 270 - -
Stre1g04260 278 CDD STKc-Aurora 14 266 - -
Stre1g04260 278 ProSitePatterns Serine-Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Stre1g04260 278 FunFam Aurora kinase A 7 98 - -
Stre1g04260 278 SMART serkin-6 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Stre1g04260 278 ProSitePatterns Protein kinases ATP-binding region signature. 21 48 IPR017441 GO:0005524(InterPro)
Stre1g04260 278 SUPERFAMILY Protein kinase-like (PK-like) 9 270 IPR011009 -
Stre1g04260 278 ProSiteProfiles Protein kinase domain profile. 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Stre1g04260 278 Gene3D Phosphorylase Kinase; domain 1 3 97 - -
Stre1g04260 278 Pfam Protein kinase domain 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Stre1g04260 278 FunFam Serine-threonine-protein kinase ark1 7 278 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04260 K08850 aurora kinase, other [EC:2.7.11.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5190721 Stre Stre1g04260 Stre-Chr1:128512398 Stre2g00877 Stre-Chr2:18312707
5211435 Stre Stre1g04252 Stre-Chr1:128446967 Stre1g04260 Stre-Chr1:128512398
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Stre9g01380 . 16 421 CBL-interacting serine-threonine protein kinases family AT2G30360 50.493 2.53e-129 377.0
Stre9g00610 WGDA 3 279 CBL-interacting serine-threonine protein kinases family AT5G10930 34.286 3.56e-54 180.0
Stre9g02672 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 42.647 3.84e-67 214.0
Stre9g01477 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 41.544 1.24e-64 207.0
Stre9g00926 . 19 279 CBL-interacting serine-threonine protein kinases family AT2G30360 37.918 2.27e-52 186.0
Stre9g00154 . 8 288 CBL-interacting serine-threonine protein kinases family AT4G24400 41.892 1.99e-69 222.0
Stre1g04232 . 1 420 CBL-interacting serine-threonine protein kinases family AT5G45820 58.156 0.0 509.0
Stre1g01908 . 13 311 CBL-interacting serine-threonine protein kinases family AT2G26980 38.941 7.60e-68 216.0
Stre1g03568 . 8 267 CBL-interacting serine-threonine protein kinases family AT4G24400 44.853 3.60e-70 224.0
Stre1g04281 . 1 420 CBL-interacting serine-threonine protein kinases family AT5G45820 58.156 0.0 509.0
Stre1g02590 . 1 382 CBL-interacting serine-threonine protein kinases family AT2G30360 60.26 8.06e-164 464.0
Stre1g04278 . 1 420 CBL-interacting serine-threonine protein kinases family AT5G45820 58.156 0.0 509.0
Stre1g04729 . 1 453 CBL-interacting serine-threonine protein kinases family AT5G58380 61.894 0.0 585.0
Stre1g01833 . 15 489 CBL-interacting serine-threonine protein kinases family AT4G18700 75.0 0.0 724.0
Stre1g03625 . 3 223 CBL-interacting serine-threonine protein kinases family AT5G35410 32.743 8.15e-36 132.0
Stre1g04260 . 43 302 CBL-interacting serine-threonine protein kinases family AT5G25110 40.684 6.23e-65 209.0
Stre1g00537 . 9 337 CBL-interacting serine-threonine protein kinases family AT2G26980 64.438 2.78e-151 468.0
Stre1g02891 . 1 451 CBL-interacting serine-threonine protein kinases family AT5G58380 66.15 0.0 627.0
Stre1g04233 . 18 428 CBL-interacting serine-threonine protein kinases family AT5G01820 63.507 2.61e-180 509.0
Stre1g03554 . 8 267 CBL-interacting serine-threonine protein kinases family AT4G24400 44.485 2.17e-69 222.0
Stre1g00534 . 28 460 CBL-interacting serine-threonine protein kinases family AT1G30270 72.12 0.0 653.0
Stre1g02594 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 59.529 1.60e-175 496.0
Stre1g04725 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 61.033 0.0 529.0
Stre1g04279 . 1 367 CBL-interacting serine-threonine protein kinases family AT2G30360 56.117 9.38e-137 393.0
Stre10g01373 . 1 444 CBL-interacting serine-threonine protein kinases family AT3G17510 66.368 0.0 595.0
Stre10g01721 . 12 284 CBL-interacting serine-threonine protein kinases family AT2G25090 32.117 5.77e-39 150.0
Stre10g01152 . 2 450 CBL-interacting serine-threonine protein kinases family AT5G58380 49.558 4.74e-152 437.0
Stre10g00847 . 1 441 CBL-interacting serine-threonine protein kinases family AT5G10930 63.596 0.0 578.0
Stre10g01159 . 2 450 CBL-interacting serine-threonine protein kinases family AT5G58380 56.416 0.0 525.0
Stre10g02499 ACH 18 273 CBL-interacting serine-threonine protein kinases family AT5G10930 33.459 7.97e-45 160.0
Stre11g02768 . 16 438 CBL-interacting serine-threonine protein kinases family AT4G30960 72.941 0.0 610.0
Stre11g02229 . 28 457 CBL-interacting serine-threonine protein kinases family AT1G30270 85.116 0.0 778.0
Stre11g01159 . 11 281 CBL-interacting serine-threonine protein kinases family AT4G18700 26.91 4.79e-19 89.0
Stre11g02785 . 16 438 CBL-interacting serine-threonine protein kinases family AT4G30960 72.941 0.0 610.0
Stre11g00280 . 313 434 CBL-interacting serine-threonine protein kinases family AT4G30960 59.677 1.03e-37 132.0
Stre11g01141 . 15 487 CBL-interacting serine-threonine protein kinases family AT4G18700 72.842 0.0 708.0
Stre11g01528 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.751 1.37e-92 285.0
Stre4g02540 . 38 470 CBL-interacting serine-threonine protein kinases family AT5G25110 68.506 0.0 639.0
Stre4g02680 . 9 251 CBL-interacting serine-threonine protein kinases family AT4G24400 32.099 3.19e-38 137.0
Stre4g00510 . 1 425 CBL-interacting serine-threonine protein kinases family AT5G45820 66.297 0.0 601.0
Stre4g01690 . 30 309 CBL-interacting serine-threonine protein kinases family AT1G30270 39.803 8.08e-68 219.0
Stre2g00877 WGDA 3 278 CBL-interacting serine-threonine protein kinases family AT5G10930 35.125 1.10e-54 181.0
Stre2g05622 . 9 262 CBL-interacting serine-threonine protein kinases family AT4G24400 52.756 6.84e-94 291.0
Stre2g02085 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 46.304 2.12e-78 248.0
Stre2g02491 . 13 447 CBL-interacting serine-threonine protein kinases family AT1G01140 73.563 0.0 688.0
Stre2g02844 . 16 439 CBL-interacting serine-threonine protein kinases family AT4G30960 74.178 0.0 617.0
Stre2g05620 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 47.51 1.97e-78 244.0
Stre2g02336 . 5 439 CBL-interacting serine-threonine protein kinases family AT5G10930 62.67 0.0 586.0
Stre2g02384 . 5 439 CBL-interacting serine-threonine protein kinases family AT5G10930 62.443 0.0 585.0
Stre8g01410 . 1 445 CBL-interacting serine-threonine protein kinases family AT4G24400 79.866 0.0 753.0
Stre8g01367 . 6 262 CBL-interacting serine-threonine protein kinases family AT4G24400 50.973 1.19e-86 271.0
Stre8g00736 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 56.573 1.05e-162 463.0
Stre3g01691 ACH 21 284 CBL-interacting serine-threonine protein kinases family AT2G25090 33.579 1.97e-47 167.0
Stre3g00469 . 30 324 CBL-interacting serine-threonine protein kinases family AT1G30270 38.82 4.36e-69 222.0
Stre3g00308 . 14 376 CBL-interacting serine-threonine protein kinases family AT4G14580 59.016 6.29e-147 422.0
Stre3g00688 . 1 441 CBL-interacting serine-threonine protein kinases family AT5G10930 63.82 0.0 576.0
Stre5g03113 . 17 257 CBL-interacting serine-threonine protein kinases family AT5G25110 33.058 7.32e-39 140.0
Stre5g02926 ACH,WGDA 10 224 CBL-interacting serine-threonine protein kinases family AT5G58380 28.916 1.27e-13 70.9
Stre5g02599 . 30 280 CBL-interacting serine-threonine protein kinases family AT1G30270 42.205 4.09e-65 208.0
Stre5g02473 . 12 282 CBL-interacting serine-threonine protein kinases family AT2G25090 41.343 2.14e-65 212.0
Stre6g01104 . 60 429 CBL-interacting serine-threonine protein kinases family AT5G01820 59.733 1.17e-152 436.0
Stre6g02857 WGDA 71 234 CBL-interacting serine-threonine protein kinases family AT5G01810 29.255 1.76e-15 79.0
Stre6g02000 . 19 279 CBL-interacting serine-threonine protein kinases family AT2G30360 38.29 6.55e-53 186.0
Stre6g01476 . 16 441 CBL-interacting serine-threonine protein kinases family AT4G30960 74.299 0.0 618.0
Stre6g02839 WGDA 71 234 CBL-interacting serine-threonine protein kinases family AT5G01810 29.255 1.92e-15 79.0
Stre6g00829 . 1 419 CBL-interacting serine-threonine protein kinases family AT5G45820 56.295 8.34e-168 476.0
Stre6g02792 . 28 457 CBL-interacting serine-threonine protein kinases family AT1G30270 84.419 0.0 771.0
Stre6g00137 . 2 297 CBL-interacting serine-threonine protein kinases family AT4G24400 41.042 4.73e-69 221.0
Stre6g02684 . 2 410 CBL-interacting serine-threonine protein kinases family AT5G45820 58.824 0.0 530.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Stre Pkinase 4.5e-76 CL0016 PK Aur