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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04259 ATGCAGACTGCATCATCTCCCGCATTATGTGGTATCGTTCCTGTAGATTGCGTCTTCAATTGTTCAAATCAGCTACCGTATGCTTCCAATTTCAGTTTGGGGTTGTCGACAGGTAGCAGAAAGCTGAAGCTTTCTAGGTTGCAGGCTGGATTTTGGGAATCCATTAGATCTGGGTTAATAAAGAACAACTCTACACAGGTTATAGAGCCATCTTCAAGTTTCCAAGAAGATGAAGAACCTCTTCTAGAGGAATTTGTACTTGTTGAAAAAACGTTACCAGATGGAACCGTTGAACAAATTATTTTTTCTTCTGGTGCAGAAGTTGATGTATATGATCTTCAAGCCTTGTGCGACAAGGTTGGTTGGCCAAGAAGACCATTAACAAAGCTAGCTGCTGCATTGAGAAATAGTTACATGGTAGCAACATTGCATTCCATAAAGAAATCAGCCAATGAAGAATTAACAGAAGCCGTTAATGAAAAGAAACTCATTGGTATGGCTCGTGCCACATCAGATCATGCATTTAATGCAACAATATGGGATGTCCTTGTAGATCCTAATTACCAGGGGCAAGGTCTTGGAAAAGCTTTAATTGAGAAGCTTATAAGAGCTTTACTTCAGAGGGATATTGGCAACATATCATTATTTGCAGACAGTAAAGTTGTGGAATTTTATAGAAATTTAGGATTTGAACCCGACCCAGAGGGCATTAAAGGTATGTTTTGGTATCCAAGGTTTTAG 741 39.27 MQTASSPALCGIVPVDCVFNCSNQLPYASNFSLGLSTGSRKLKLSRLQAGFWESIRSGLIKNNSTQVIEPSSSFQEDEEPLLEEFVLVEKTLPDGTVEQIIFSSGAEVDVYDLQALCDKVGWPRRPLTKLAAALRNSYMVATLHSIKKSANEELTEAVNEKKLIGMARATSDHAFNATIWDVLVDPNYQGQGLGKALIEKLIRALLQRDIGNISLFADSKVVEFYRNLGFEPDPEGIKGMFWYPRF 246
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04259 246 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 100 246 IPR000182 GO:0016747(InterPro)
Stre1g04259 246 Gene3D - 104 243 - -
Stre1g04259 246 CDD NAT-SF 157 215 - -
Stre1g04259 246 Pfam Acetyltransferase (GNAT) family 137 230 IPR000182 GO:0016747(InterPro)
Stre1g04259 246 FunFam Putative acetyltransferase NSI 104 243 - -
Stre1g04259 246 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 109 236 IPR016181 -
Stre1g04259 246 PANTHER ACYL-COA N-ACYLTRANSFERASE 30 244 IPR045039 GO:0005737(PANTHER)|GO:0008080(PANTHER)|GO:0008080(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04259 K22450 aralkylamine N-acetyltransferase [EC:2.3.1.87]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5190720 Stre Stre1g04259 Stre-Chr1:128500354 Stre4g01795 Stre-Chr4:95582897
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Stre Acetyltransf_1 2.2e-15 CL0257 TR GNAT