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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso1g02029 ATGGCTTCCGAACCACTGAAACGAAACTGGTCAATTCACGATTTCGAGATCGGAAAACCCCTCGGAAAGGGGAAATTCGGTCGGGTCTATCTCGCCCGTGAAGCGAAGAGCAAGTATATAGTCGCATTGAAGGTGATATTCAAAGAGCAGATTGAAAAGTACAGGCTGCAGCACCAGCTGAAGAGAGAGATGGCAATCCAAACTAGCCTTCGACATCCGCATGTTCTCAGGCTGTACGGATGGTTTCACGATGCGGAGAGGATATTCTTGATTTTGGAGTATGCTCATGGCGGTGAGCTGTACGGGGAGCTTCGGAGATCCGGTCATCTATCGGAGAAACAAGCTGCCACCTACATTGCTAGCCTTACCCAAGCATTAGCATACTGTCATGAAAAGCATGTTATCCATCGGGATATCAAGCCAGAGAATTTGTTGCTTGATCACAAGGGTCGATTGAAGATAGCTGATTTCGGGTGGTCCGTGCAGTCAAAAAACAAGAGACACACGATGTGTGGAACATTAGACTATCTAGCACCAGAGATGGTGGAAAATAAAGCTCATGATTATGCAGTTGATAATTGGACTTTAGGTGTTTTATGTTATGAATTTCTCTATGGTGTCCCTCCTTTTGAGGCAGACAGCCAAGCTGATACATTTCGAAGGATCATGAAGGTTGACCTTACATTTCCTTCTACCCCTCATGTTTCTGATGAAGCTAAAGTTCTCATCACACAACTTTTGGTGAAAGACTCTGCAAAAAGACTCTCCCTTGAGAAGATATTAAAGCATCCTTGGATCATCATGAATGCTGACCCCAATGGTACTTTCTCTAAGTAG 837 44.56 MASEPLKRNWSIHDFEIGKPLGKGKFGRVYLAREAKSKYIVALKVIFKEQIEKYRLQHQLKREMAIQTSLRHPHVLRLYGWFHDAERIFLILEYAHGGELYGELRRSGHLSEKQAATYIASLTQALAYCHEKHVIHRDIKPENLLLDHKGRLKIADFGWSVQSKNKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGVLCYEFLYGVPPFEADSQADTFRRIMKVDLTFPSTPHVSDEAKVLITQLLVKDSAKRLSLEKILKHPWIIMNADPNGTFSK 278
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso1g02029 278 FunFam Aurora kinase A 7 98 - -
Fso1g02029 278 CDD STKc-Aurora 14 266 - -
Fso1g02029 278 ProSiteProfiles Protein kinase domain profile. 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fso1g02029 278 Pfam Protein kinase domain 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fso1g02029 278 PIRSF ILK 4 269 - -
Fso1g02029 278 ProSitePatterns Protein kinases ATP-binding region signature. 21 48 IPR017441 GO:0005524(InterPro)
Fso1g02029 278 FunFam Serine-threonine-protein kinase ark1 7 278 - -
Fso1g02029 278 SMART serkin-6 15 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Fso1g02029 278 Gene3D Transferase(Phosphotransferase) domain 1 98 275 - -
Fso1g02029 278 PANTHER SERINE-THREONINE-PROTEIN KINASE IAL-RELATED 4 275 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
Fso1g02029 278 SUPERFAMILY Protein kinase-like (PK-like) 9 268 IPR011009 -
Fso1g02029 278 ProSitePatterns Serine-Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Fso1g02029 278 Gene3D Phosphorylase Kinase; domain 1 3 97 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso1g02029 K08850 aurora kinase, other [EC:2.7.11.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2598739 Fso Fso15g02263 Fso-Chr15:70510596 Fso1g02029 Fso-Chr1:59449839
2606398 Fso Fso1g02029 Fso-Chr1:59449839 Fso2g02886 Fso-Chr2:65830800
2628233 Fso Fso1g02029 Fso-Chr1:59449839 Fso6g00593 Fso-Chr6:6673612
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fso1g00443 . 9 275 CBL-interacting serine-threonine protein kinases family AT2G26980 33.455 6.76e-46 160.0
Fso1g01956 . 1 443 CBL-interacting serine-threonine protein kinases family AT5G58380 54.362 4.94e-173 489.0
Fso1g01964 . 18 428 CBL-interacting serine-threonine protein kinases family AT5G01820 60.606 3.56e-174 493.0
Fso1g02029 . 12 277 CBL-interacting serine-threonine protein kinases family AT5G10930 40.149 5.42e-63 202.0
Fso1g02501 . 15 422 CBL-interacting serine-threonine protein kinases family AT2G30360 62.592 0.0 520.0
Fso1g02506 . 1 453 CBL-interacting serine-threonine protein kinases family AT5G58380 61.978 0.0 582.0
Fso1g02773 . 12 284 CBL-interacting serine-threonine protein kinases family AT2G25090 30.657 5.07e-37 144.0
Fso2g00073 . 42 310 CBL-interacting serine-threonine protein kinases family AT5G25110 43.972 1.23e-68 221.0
Fso2g00694 . 8 388 CBL-interacting serine-threonine protein kinases family AT4G24400 35.115 1.07e-66 217.0
Fso2g01904 . 17 298 CBL-interacting serine-threonine protein kinases family AT4G30960 78.723 1.82e-165 468.0
Fso2g02417 . 19 279 CBL-interacting serine-threonine protein kinases family AT2G30360 37.918 2.80e-52 186.0
Fso2g02825 . 2 410 CBL-interacting serine-threonine protein kinases family AT5G45820 59.502 0.0 538.0
Fso2g02826 . 16 480 CBL-interacting serine-threonine protein kinases family AT4G18700 71.828 0.0 684.0
Fso2g02886 . 28 457 CBL-interacting serine-threonine protein kinases family AT1G30270 83.953 0.0 769.0
Fso3g00055 . 8 288 CBL-interacting serine-threonine protein kinases family AT4G24400 41.837 6.68e-66 213.0
Fso3g00495 . 9 262 CBL-interacting serine-threonine protein kinases family AT4G24400 52.756 9.52e-94 290.0
Fso3g00609 . 181 429 CBL-interacting serine-threonine protein kinases family AT5G01820 52.4 9.51e-76 234.0
Fso3g01075 . 1 444 CBL-interacting serine-threonine protein kinases family AT3G17510 66.816 0.0 598.0
Fso4g00077 . 130 286 CBL-interacting serine-threonine protein kinases family AT1G30270 24.691 1.97e-06 47.4
Fso4g00215 . 1 374 CBL-interacting serine-threonine protein kinases family AT4G14580 54.805 1.17e-138 402.0
Fso5g00681 . 11 259 CBL-interacting serine-threonine protein kinases family AT5G57630 27.331 3.13e-13 68.2
Fso5g01531 . 1 445 CBL-interacting serine-threonine protein kinases family AT4G24400 80.537 0.0 756.0
Fso5g01580 . 59 279 CBL-interacting serine-threonine protein kinases family AT2G25090 24.603 5.06e-09 57.8
Fso5g01590 . 6 262 CBL-interacting serine-threonine protein kinases family AT4G24400 51.751 3.68e-88 275.0
Fso5g01660 . 315 388 CBL-interacting serine-threonine protein kinases family AT4G14580 42.105 5.95e-07 44.7
Fso6g00211 . 8 306 CBL-interacting serine-threonine protein kinases family AT4G24400 41.875 4.43e-71 226.0
Fso6g00593 WGDA 3 279 CBL-interacting serine-threonine protein kinases family AT5G10930 35.0 2.96e-55 183.0
Fso6g00813 . 19 277 CBL-interacting serine-threonine protein kinases family AT2G30360 38.202 3.01e-50 180.0
Fso6g01138 . 1 445 CBL-interacting serine-threonine protein kinases family AT5G35410 71.3 0.0 661.0
Fso6g02151 . 8 310 CBL-interacting serine-threonine protein kinases family AT4G24400 40.0 4.58e-67 216.0
Fso7g00710 . 11 281 CBL-interacting serine-threonine protein kinases family AT4G18700 28.808 7.86e-23 100.0
Fso7g00776 . 3 425 CBL-interacting serine-threonine protein kinases family AT5G45820 68.597 0.0 620.0
Fso8g00334 . 231 425 CBL-interacting serine-threonine protein kinases family AT4G14580 40.796 1.37e-39 138.0
Fso9g00066 . 8 265 CBL-interacting serine-threonine protein kinases family AT4G24400 43.494 2.20e-66 214.0
Fso9g00571 . 11 210 CBL-interacting serine-threonine protein kinases family AT5G57630 26.4 1.48e-09 57.0
Fso9g01756 . 2 288 CBL-interacting serine-threonine protein kinases family AT2G25090 31.633 3.47e-43 155.0
Fso10g00694 . 1 450 CBL-interacting serine-threonine protein kinases family AT5G58380 57.65 0.0 536.0
Fso10g01720 . 28 457 CBL-interacting serine-threonine protein kinases family AT1G30270 85.349 0.0 778.0
Fso10g03071 . 2 291 CBL-interacting serine-threonine protein kinases family AT4G24400 40.532 9.55e-68 218.0
Fso11g00280 . 8 282 CBL-interacting serine-threonine protein kinases family AT4G24400 42.105 6.51e-67 215.0
Fso11g00550 . 31 309 CBL-interacting serine-threonine protein kinases family AT5G25110 71.071 1.51e-154 442.0
Fso11g01246 . 8 291 CBL-interacting serine-threonine protein kinases family AT4G24400 43.051 7.97e-69 220.0
Fso11g02733 . 14 439 CBL-interacting serine-threonine protein kinases family AT4G30960 75.234 0.0 624.0
Fso12g01766 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 60.0 2.64e-179 505.0
Fso12g01767 . 377 449 CBL-interacting serine-threonine protein kinases family AT5G58380 63.014 1.54e-26 100.0
Fso12g02056 . 1 444 CBL-interacting serine-threonine protein kinases family AT5G58380 53.587 1.46e-167 477.0
Fso12g02086 . 15 472 CBL-interacting serine-threonine protein kinases family AT4G18700 79.085 0.0 744.0
Fso13g02166 . 12 438 CBL-interacting serine-threonine protein kinases family AT4G30960 71.694 0.0 609.0
Fso14g01040 . 18 466 CBL-interacting serine-threonine protein kinases family AT5G25110 61.688 0.0 594.0
Fso14g02123 . 1 454 CBL-interacting serine-threonine protein kinases family AT5G58380 65.055 0.0 615.0
Fso15g00106 . 14 423 CBL-interacting serine-threonine protein kinases family AT4G14580 53.771 8.21e-151 432.0
Fso15g01558 . 30 309 CBL-interacting serine-threonine protein kinases family AT1G30270 39.934 2.61e-67 218.0
Fso15g01613 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.751 1.50e-92 285.0
Fso15g02263 WGDA 3 278 CBL-interacting serine-threonine protein kinases family AT5G10930 35.842 1.50e-55 184.0
Fso16g01682 . 10 446 CBL-interacting serine-threonine protein kinases family AT1G01140 69.794 0.0 642.0
Fso18g01163 . 28 460 CBL-interacting serine-threonine protein kinases family AT1G30270 71.429 0.0 647.0
Fso10000718.1g00002 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.362 2.81e-93 283.0
Fso10000932.1g00004 . 13 447 CBL-interacting serine-threonine protein kinases family AT1G01140 74.483 0.0 694.0
Fso10000766.1g00002 . 38 470 CBL-interacting serine-threonine protein kinases family AT5G25110 68.966 0.0 636.0
Fso10000115.1g00002 . 246 388 CBL-interacting serine-threonine protein kinases family AT4G14580 40.268 2.91e-22 92.4
Fso10001002.1g00001 . 15 472 CBL-interacting serine-threonine protein kinases family AT4G18700 79.085 0.0 744.0
Fso10000748.1g00006 . 28 457 CBL-interacting serine-threonine protein kinases family AT1G30270 85.349 0.0 778.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fso Pkinase 8.4e-75 CL0016 PK Aur