AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03563 ATGCAGACTTCATCATCTCCCTCACTATGTGCTGTCGTTCCTGTAGACTGCGTCTTCAATTGTTCAAATCAGCTACCATTCCCTTCCAGTTTCAATTTAGGTTTATCGACAGGGAGCAGAAAGCTCAAGGTTTCTAGGTTGCAGGCTGGATTTTGGGAATCCATTAGATCTGGGTTAATAAAGAACAACTCTACACAGGTTATAGAGCCATCTTCTAGTCCCCAAGAAGATGAAGAACCTCTTCCCGAGGAATTTGTACTTGTTGAGAAAACGCTACCAGATGGAACAATTGAACAGATTATTTTTTCTTCAGGTGCAGAAGTCGATGTATATGATCTCCAAGCTTTGTGTGATAAGGTTGGGTGGCCCAGAAGACCACTATCAAAGCTAGCTGCTGCCCTGAGAAATAGCTACATGGTAGCAACGTTGCATTCCATAAAGAAATCAGCTGGAGAAGAATTAACAGAAACAGATAATGAAAAGAAGCTCATTGGCATGGCTCGTGCCACATCAGATCATGCATTCCATGCAACGATATGGGATGTCCTTGTAGATCCTAGCTACCAGGGGCAAGGTCTTGGAAAAGCTCTAATTGAAAAGCTTATAAGAGCTCTACTTCAGAGGGACATAGGCAACATATCACTTTTTGCAGACAGTAAAGTTGTGGAATTTTATAGGAATCTAGGATTTGAACCCGACCCAGAGGGCATCAAAGGTATGTTTTGGTACCCTAGGTTTTAG 741 42.38 MQTSSSPSLCAVVPVDCVFNCSNQLPFPSSFNLGLSTGSRKLKVSRLQAGFWESIRSGLIKNNSTQVIEPSSSPQEDEEPLPEEFVLVEKTLPDGTIEQIIFSSGAEVDVYDLQALCDKVGWPRRPLSKLAAALRNSYMVATLHSIKKSAGEELTETDNEKKLIGMARATSDHAFHATIWDVLVDPSYQGQGLGKALIEKLIRALLQRDIGNISLFADSKVVEFYRNLGFEPDPEGIKGMFWYPRF 246
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03563 246 FunFam Putative acetyltransferase NSI 104 243 - -
Smso1g03563 246 Gene3D - 104 243 - -
Smso1g03563 246 PANTHER ACYL-COA N-ACYLTRANSFERASE 8 244 IPR045039 GO:0005737(PANTHER)|GO:0008080(InterPro)|GO:0008080(PANTHER)
Smso1g03563 246 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 100 246 IPR000182 GO:0016747(InterPro)
Smso1g03563 246 CDD NAT-SF 158 215 - -
Smso1g03563 246 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 109 236 IPR016181 -
Smso1g03563 246 Pfam Acetyltransferase (GNAT) family 150 230 IPR000182 GO:0016747(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03563 K22450 aralkylamine N-acetyltransferase [EC:2.3.1.87]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4967712 Smso Smso1g03563 Smso-Chr1:120592667 Smso22g01585 Smso-Chr22:59299719
5013946 Smso Smso1g03563 Smso-Chr1:120592667 Smso14g01894 Smso-Chr14:74037641
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Smso Acetyltransf_1 3.2e-15 CL0257 TR GNAT