AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
  The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00041 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00042 Cobi2g02229 Bial10g01267 Bial22g00858 Dapi4g01820 Dapi20g01757 Hetu1g00053 Hetu2g00116 Hetu3g00053 Amtr12g00265 Smso1g03565 Smso28g00521 Taer4g02319 Fro14g01236 Fso1g02030 Ftr2g00836 Fra18g01713 Fli3g00884 Stre1g04261 . Hean11g02566 . Bial12g02715 Bial24g02558 Dapi4g01820 Dapi31g02038 Hetu32g02165 Hetu31g02161 Hetu33g02093 Amtr07g04625 . Smso20g01803 Taer4g02319 . . Ftr6g02278 Fra13g01451 Fli9g01365 Stre1g04266 .
Hean1g00043 Cobi2g02230 . Bial22g00859 Dapi4g01821 Dapi20g01759 Hetu1g00054 Hetu2g00117 Hetu3g00054 Amtr12g00267 Smso1g03566 Smso28g00520 Taer4g02320 Fro14g01237 Fso1g02035 . Fra18g01714 Fli3g00882 Stre1g04262 . Hean11g02568 . . . Dapi4g01821 Dapi20g01759 Hetu32g02167 Hetu31g02162 Hetu33g02094 Amtr07g04629 . . . . . . . . Stre1g04267 .
Hean1g00044 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00045 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00046 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00047 . Bial10g01268 Bial22g00860 Dapi4g01822 Dapi20g01760 Hetu1g00055 Hetu2g00118 . . . Smso28g00519 . . . . . . Stre1g04263 . Hean11g02570 Cobi6g01049 Bial12g02716 Bial24g02559 Dapi4g01822 Dapi31g02039 Hetu32g02168 Hetu31g02163 Hetu33g02095 Amtr07g04630 . Smso20g01804 . . . . . . Stre1g04268 .
Hean1g00048 Cobi2g02231 Bial10g01270 Bial22g00862 Dapi4g01823 Dapi20g01761 Hetu1g00056 Hetu2g00119 Hetu3g00056 Amtr12g00268 Smso1g03569 Smso28g00518 . . . . . . Stre1g04264 . . . . . . . . . . . . . . . . . . . . .
Hean1g00049 Cobi2g02232 Bial10g01271 Bial22g00863 Dapi4g01824 Dapi20g01762 Hetu1g00057 Hetu2g00120 Hetu3g00057 Amtr12g00278 Smso1g03571 Smso28g00517 Taer4g02322 Fro14g01239 Fso1g02037 . Fra18g01716 Fli3g00880 Stre1g04265 . . . . . . . . . . . . . . . . . . . . .
Hean1g00050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
7 98265300 98266325 - AtrifAMIRv0_Chr07g0497721 Amtr07g04625 4625
7 98414630 98415586 - AtrifAMIRv0_Chr07g0497761 Amtr07g04629 4629
7 98470722 98473937 - AtrifAMIRv0_Chr07g0497771 Amtr07g04630 4630
12 8016469 8017521 - AtrifAMIRv0_Chr12g0719971 Amtr12g00265 265
12 8039526 8040491 - AtrifAMIRv0_Chr12g0719991 Amtr12g00267 267
12 8077143 8078147 + AtrifAMIRv0_Chr12g0720001 Amtr12g00268 268
12 8433868 8434437 - AtrifAMIRv0_Chr12g0720101 Amtr12g00278 278
10 12671930 12673081 - g86902.t1 Bial10g01267 1267
10 12677702 12682074 - g86901.t1 Bial10g01268 1268
10 12686601 12687521 + g86899.t1 Bial10g01270 1270
10 12691880 12692488 - g86898.t1 Bial10g01271 1271
12 57349410 57350462 - g35914.t1 Bial12g02715 2715
12 57356926 57360881 - g35915.t1 Bial12g02716 2716
22 8244263 8248158 - g147176.t1 Bial22g00858 858
22 8249642 8250586 - g147175.t1 Bial22g00859 859
22 8252437 8254095 - g147174.t1 Bial22g00860 860
22 8259924 8264020 + g147172.t1 Bial22g00862 862
22 8266803 8267411 - g147171.t1 Bial22g00863 863
24 56452316 56454683 - g68224.t1 Bial24g02558 2558
24 56457624 56463860 - g68225.t1 Bial24g02559 2559
2 68643313 68645862 - h2tg000016l_1.g5017.t1 Cobi2g02229 2229
2 68655877 68656836 - h2tg000016l_1.g5016.t1 Cobi2g02230 2230
2 68661511 68662230 + h2tg000016l_1.g5015.t1 Cobi2g02231 2231
2 68675865 68676443 - h2tg000016l_1.g5014.t1 Cobi2g02232 2232
6 8426347 8434468 + h2tg000031l_1.g19362.t1 Cobi6g01049 1049
4 114852668 114853723 - h1tg000180l.g132134.t1 Dapi4g01820 1820
4 114882979 114883941 - h1tg000180l.g132135.t1 Dapi4g01821 1821
4 114886559 114887931 - h1tg000180l.g132136.t1 Dapi4g01822 1822
4 114903403 114904425 + h1tg000180l.g132137.t1 Dapi4g01823 1823
4 114911468 114912055 - h1tg000180l.g132138.t1 Dapi4g01824 1824
20 106176541 106177602 - h1tg000033l.g91473.t1 Dapi20g01757 1757
20 106197612 106198568 - h1tg000033l.g91475.t1 Dapi20g01759 1759
20 106200182 106201955 - h1tg000033l.g91476.t1 Dapi20g01760 1760
20 106205718 106206743 + h1tg000033l.g91477.t1 Dapi20g01761 1761
20 106212561 106213151 - h1tg000033l.g91478.t1 Dapi20g01762 1762
31 100905461 100906534 - h2tg000063l.g12123.t1 Dapi31g02038 2038
31 100926583 100930834 - h2tg000063l.g12124.t1 Dapi31g02039 2039
3 24343393 24343974 + FliAMIRv0_Chr03g0081491 Fli3g00880 880
3 24393014 24393979 + FliAMIRv0_Chr03g0081511 Fli3g00882 882
3 24493660 24494727 + FliAMIRv0_Chr03g0081531 Fli3g00884 884
9 70681647 70682684 - FliAMIRv0_Chr09g0221311 Fli9g01365 1365
13 42848574 42849629 + FraAMIRv0_Chr13g0267591 Fra13g01451 1451
18 65130587 65131657 - FraAMIRv0_Chr18g0359101 Fra18g01713 1713
18 65156047 65157012 - FraAMIRv0_Chr18g0359111 Fra18g01714 1714
18 65178143 65178724 - FraAMIRv0_Chr18g0359131 Fra18g01716 1716
14 19875747 19876826 - FroAMIRv0_Chr14g0253901 Fro14g01236 1236
14 19892494 19893453 - FroAMIRv0_Chr14g0253911 Fro14g01237 1237
14 19904682 19905248 - FroAMIRv0_Chr14g0253931 Fro14g01239 1239
1 59455544 59456611 - FsoAMIRv0_Chr01g0020291 Fso1g02030 2030
1 59480906 59481865 - FsoAMIRv0_Chr01g0020341 Fso1g02035 2035
1 59495591 59496169 - FsoAMIRv0_Chr01g0020361 Fso1g02037 2037
2 15785332 15786402 + FtrAMIRv0_Chr02g0037031 Ftr2g00836 836
6 89568233 89569478 - FtrAMIRv0_Chr06g0184262 Ftr6g02278 2278
1 1205621 1208438 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000461 Hean1g00041 41
1 1365781 1367802 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000471 Hean1g00042 42
1 1372051 1373013 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000481 Hean1g00043 43
1 1374191 1379113 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000491 Hean1g00044 44
1 1382307 1384067 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000501 Hean1g00045 45
1 1389177 1390299 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000511 Hean1g00046 46
1 1396508 1399122 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000521 Hean1g00047 47
1 1401925 1404266 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000531 Hean1g00048 48
1 1409283 1410069 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000541 Hean1g00049 49
1 1446514 1447858 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000551 Hean1g00050 50
11 114034058 114035885 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0496511 Hean11g02566 2566
11 114097700 114098665 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0496531 Hean11g02568 2568
11 114102825 114107465 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0496551 Hean11g02570 2570
1 2765603 2768716 - >Htub.h1tg003317l.g18.t1 Hetu1g00053 53
1 2774030 2774992 - >Htub.h1tg003317l.g19.t1 Hetu1g00054 54
1 2777199 2780674 - >Htub.h1tg003317l.g20.t1 Hetu1g00055 55
1 2798923 2799984 + >Htub.h1tg003317l.g21.t1 Hetu1g00056 56
1 2803727 2804290 - >Htub.h1tg003317l.g22.t1 Hetu1g00057 57
2 3778154 3779230 - >Htub.h1tg002382l.g155.t1 Hetu2g00116 116
2 3785372 3786334 - >Htub.h1tg002382l.g156.t1 Hetu2g00117 117
2 3792291 3801011 - >Htub.h1tg002382l.g157.t1 Hetu2g00118 118
2 3804740 3805606 + >Htub.h1tg002382l.g158.t1 Hetu2g00119 119
2 3808812 3809375 - >Htub.h1tg002382l.g159.t1 Hetu2g00120 120
3 2798331 2801382 - >Htub.h1tg000837l.g92.t1 Hetu3g00053 53
3 2805099 2806061 - >Htub.h1tg000837l.g91.t1 Hetu3g00054 54
3 2827568 2836149 + >Htub.h1tg000837l.g88.t1 Hetu3g00056 56
3 2839216 2839779 - >Htub.h1tg000837l.g87.t1 Hetu3g00057 57
31 123374268 123376229 - >Htub.h1tg001293l.g240.t1 Hetu31g02161 2161
31 123524678 123525637 - >Htub.h1tg001293l.g241.t1 Hetu31g02162 2162
31 123533468 123537605 - >Htub.h1tg001293l.g242.t1 Hetu31g02163 2163
32 125404587 125405588 - >Htub.h1tg000110l.g17.t1 Hetu32g02165 2165
32 125572684 125573643 - >Htub.h1tg000110l.g15.t1 Hetu32g02167 2167
32 125592104 125596100 - >Htub.h1tg000110l.g14.t1 Hetu32g02168 2168
33 117813530 117814531 - >Htub.h1tg000866l.g468.t1 Hetu33g02093 2093
33 117950657 117951616 - >Htub.h1tg000866l.g467.t1 Hetu33g02094 2094
33 117980245 117984240 - >Htub.h1tg000866l.g466.t1 Hetu33g02095 2095
1 120615090 120617591 - KAI3829528.1 Smso1g03565 3565
1 120638643 120639608 - KAI3829529.1 Smso1g03566 3566
1 120652166 120655897 + KAI3829532.1 Smso1g03569 3569
1 120696306 120696878 - KAI3829534.1 Smso1g03571 3571
20 61122602 61126113 - KAI3742799.1 Smso20g01803 1803
20 61170727 61175086 - KAI3742800.1 Smso20g01804 1804
28 14463343 14463915 + KAI3682797.1 Smso28g00517 517
28 14542867 14543616 - KAI3682798.1 Smso28g00518 518
28 14557730 14560439 + KAI3682799.1 Smso28g00519 519
28 14584588 14585547 + KAI3682800.1 Smso28g00520 520
28 14602190 14603534 + KAI3682801.1 Smso28g00521 521
1 128523731 128528612 - Streb.1G042610.1 Stre1g04261 4261
1 128532371 128533327 - Streb.1G042620.1 Stre1g04262 4262
1 128535498 128537318 - Streb.1G042630.1 Stre1g04263 4263
1 128548565 128550980 + Streb.1G042640.1 Stre1g04264 4264
1 128578969 128579839 - Streb.1G042650.1 Stre1g04265 4265
1 128619388 128621452 - Streb.1G042660.1 Stre1g04266 4266
1 128625427 128626383 - Streb.1G042670.1 Stre1g04267 4267
1 128629139 128631198 - Streb.1G042680.1 Stre1g04268 4268
4 53081604 53083055 - >KAK1428101.1 Taer4g02319 2319
4 53093519 53094490 - >KAK1428102.1 Taer4g02320 2320
4 53136805 53137341 - >KAK1428104.1 Taer4g02322 2322
       
DecoBrowse