AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso28g00520 ATGAGGCTTCAATTTCGAAGTCCAGTGAAACTTGTTTTGCTAATTTGCTTCTGCTGGTGGCCAATTGTTGAATCTCAAATATCTAATCCTCTACCAAAGCCTGCAAGGGCTCTTGATGCAACCCTACAAGACTATGCATTTCGTGCGTTTATTAATCCGCGTACTGGTATTCCCTTTGATGGAATTGTCCCGCCATATTTGACAGGAATTGAGATATCAGCAATGAGGCTCAGAAGCGGTAGTCTGTATCGTCGAGGCGTTAAAACCTTTAAAGAGTTCTTAATTCCGGTTGGTTTAAGAGAGCAGCCTTATGTGGAGCGACTTGTTCTGGTGTATCAAAATTTAGGAAATTGGTCCACAACTTATTACTCTTTACCTGGTTATGTTTATCTAGCTCCGATATTAGGTCTTCTTGCTTATAATGGTTCAGATTTGTCAGCTTCTAATATACCAGAACTTGACTTGTGGGCTTCTGAGGAAGTCATTACGATAAATTTTGGAAGAATACGCCCCATACCAGTTGGTTCGGTTGCAAAGTGTGCTTGGTTTGATCTACATGGTCAGGTGAATCTCACAAACTTGTTATCTGGGAATGTATGTTCAACCACTGAACAGGGGCATTTCTCCATTGTGGCTGAATCAGCTGTCCCTCCTGTTCCAGTACCTCCTGCACCACCAGAAACTGCACCATCTGAACCTGCACACAGTAGTAGAAAGAACAATGAGCCTAGGGTTTGGGGTATTATTGGCGCGGTAACTGGTGGAACTGCATTGTTGGTGTTGTTGGCATTGTTGATATTGTGGGCTTGGCGTTACAAAAAGAGAAAACGAATGCGTGAGTTAGAAAGGGCTGCAGATGCTGGTGAAGCATTGAGGATGACCAGAATTGGGAGCATGAGAGCACCATTTGCATTGGCCACAAGAACAATGCCGAATTTTGAAAGCGACTTTGGTGCTTGA 960 43.44 MRLQFRSPVKLVLLICFCWWPIVESQISNPLPKPARALDATLQDYAFRAFINPRTGIPFDGIVPPYLTGIEISAMRLRSGSLYRRGVKTFKEFLIPVGLREQPYVERLVLVYQNLGNWSTTYYSLPGYVYLAPILGLLAYNGSDLSASNIPELDLWASEEVITINFGRIRPIPVGSVAKCAWFDLHGQVNLTNLLSGNVCSTTEQGHFSIVAESAVPPVPVPPAPPETAPSEPAHSSRKNNEPRVWGIIGAVTGGTALLVLLALLILWAWRYKKRKRMRELERAADAGEALRMTRIGSMRAPFALATRTMPNFESDFGA 319
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso28g00520 319 Pfam Protein of unknown function (DUF1191) 34 212 IPR010605 -
Smso28g00520 319 PANTHER PROTEIN, PUTATIVE (DUF1191)-RELATED 13 317 IPR010605 GO:0016020(PANTHER)
Smso28g00520 319 MobiDBLite consensus disorder prediction 219 240 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso28g00520 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
147317 Smso17g00123 Smso28g00520
153322 Smso28g00520 Smso8g00129
337968 Smso28g00520 Smso1g03566
357519 Smso1g03566 Smso28g00520
429020 Smso1g03566 Smso28g00520
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4984998 Smso Smso28g00520 Smso-Chr28:14584588 Smso29g01142 Smso-Chr29:22647622
5027940 Smso Smso1g03566 Smso-Chr1:120638643 Smso28g00520 Smso-Chr28:14584588
5065541 Smso Smso17g00123 Smso-Chr17:1386938 Smso28g00520 Smso-Chr28:14584588
5096378 Smso Smso28g00520 Smso-Chr28:14584588 Smso8g00129 Smso-Chr8:1755635