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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
  The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00051 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00052 Cobi2g02240 Bial10g01272 Bial22g00864 Dapi4g01827 Dapi20g01764 Hetu1g00058 Hetu2g00121 Hetu3g00059 Amtr12g00284 Smso1g03573 Smso28g00516 Taer4g02324 Fro14g01240 Fso1g02038 Ftr2g00825 Fra18g01718 Fli3g00878 Stre1g04273 . Hean11g02575 Cobi6g01047 Bial12g02718 Bial24g02561 Dapi4g01827 Dapi31g02041 Hetu32g02171 Hetu31g02166 Hetu33g02099 Amtr07g04633 . Smso20g01806 Taer4g02324 Fro13g01325 . Ftr6g02282 . Fli9g01370 Stre1g04286 .
Hean1g00053 . . . . . . . . . Smso1g03574 Smso28g00515 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00054 . . . Dapi4g01829 . Hetu1g00060 Hetu2g00123 Hetu3g00061 Amtr12g00286 . . Taer4g02326 Fro14g01242 Fso1g02040 Ftr2g00823 Fra18g01720 Fli3g00876 Stre1g04275 . Hean11g02578 Cobi6g01045 Bial12g02720 Bial24g02563 Dapi4g01830 Dapi31g02042 Hetu32g02172 Hetu31g02168 Hetu33g02101 . . Smso20g01808 Taer4g02326 Fro13g01326 Fso12g01894 . . Fli9g01373 Stre1g04289 .
Hean1g00055 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00056 Cobi2g02242 Bial10g01274 Bial22g00866 Dapi4g01835 Dapi20g01767 Hetu1g00061 Hetu2g00124 . Amtr12g00287 . Smso28g00514 Taer4g02327 Fro14g01243 . Ftr2g00819 Fra18g01723 Fli3g00874 Stre1g04292 Mimi16g02072 Hean11g02579 Cobi6g01044 Bial12g02721 Bial24g02567 Dapi4g01835 Dapi31g02043 Hetu32g02178 Hetu31g02169 Hetu33g02102 Amtr07g04637 . Smso20g01809 Taer4g02327 Fro13g01327 Fso12g01895 Ftr6g02283 . Fli9g01375 Stre1g04292 Mimi16g02072
Hean1g00057 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00058 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00060 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
7 98689147 98689800 + AtrifAMIRv0_Chr07g0497801 Amtr07g04633 4633
7 98867266 98868440 - AtrifAMIRv0_Chr07g0497841 Amtr07g04637 4637
12 8588076 8588735 + AtrifAMIRv0_Chr12g0720161 Amtr12g00284 284
12 8596537 8600271 - AtrifAMIRv0_Chr12g0720181 Amtr12g00286 286
12 8620506 8621836 - AtrifAMIRv0_Chr12g0720191 Amtr12g00287 287
10 12713346 12713942 + g86897.t1 Bial10g01272 1272
10 12727604 12728579 - g86895.t1 Bial10g01274 1274
12 57369239 57369892 + g35917.t1 Bial12g02718 2718
12 57375248 57380408 - g35919.t1 Bial12g02720 2720
12 57386753 57388261 - g35920.t1 Bial12g02721 2721
22 8276713 8277306 + g147170.t1 Bial22g00864 864
22 8284526 8285541 - g147168.t1 Bial22g00866 866
24 56473433 56474080 + g68227.t1 Bial24g02561 2561
24 56480226 56484093 - g68229.t1 Bial24g02563 2563
24 56505286 56507983 - g68233.t1 Bial24g02567 2567
2 68868838 68869392 + h2tg000016l_1.g5006.t1 Cobi2g02240 2240
2 68895902 68897389 + h2tg000016l_1.g5004.t1 Cobi2g02242 2242
6 8394526 8395211 + h2tg000031l_1.g19357.t1 Cobi6g01044 1044
6 8398414 8403728 + h2tg000031l_1.g19358.t1 Cobi6g01045 1045
6 8409259 8409915 - h2tg000031l_1.g19360.t1 Cobi6g01047 1047
4 115068970 115069614 + h1tg000180l.g132141.t1 Dapi4g01827 1827
4 115079691 115080637 - h1tg000180l.g132143.t1 Dapi4g01829 1829
4 115122766 115123713 - h1tg000180l.g132144.t1 Dapi4g01830 1830
4 115275498 115276549 - h1tg000180l.g132149.t1 Dapi4g01835 1835
20 106370042 106370686 + h1tg000033l.g91480.t1 Dapi20g01764 1764
20 106395983 106396791 - h1tg000033l.g91483.t1 Dapi20g01767 1767
31 100997686 100998330 + h2tg000063l.g12126.t1 Dapi31g02041 2041
31 101000966 101006725 - h2tg000063l.g12127.t1 Dapi31g02042 2042
31 101012418 101014196 - h2tg000063l.g12128.t1 Dapi31g02043 2043
3 24154596 24155298 + FliAMIRv0_Chr03g0081431 Fli3g00874 874
3 24198402 24201826 + FliAMIRv0_Chr03g0081451 Fli3g00876 876
3 24223492 24224142 - FliAMIRv0_Chr03g0081471 Fli3g00878 878
9 70765539 70766192 + FliAMIRv0_Chr09g0221361 Fli9g01370 1370
9 70869546 70874121 - FliAMIRv0_Chr09g0221391 Fli9g01373 1373
9 70885709 70886387 - FliAMIRv0_Chr09g0221411 Fli9g01375 1375
18 65200967 65201629 + FraAMIRv0_Chr18g0359151 Fra18g01718 1718
18 65208715 65212385 - FraAMIRv0_Chr18g0359171 Fra18g01720 1720
18 65265469 65266162 - FraAMIRv0_Chr18g0359201 Fra18g01723 1723
13 22796862 22797515 + FroAMIRv0_Chr13g0235071 Fro13g01325 1325
13 22811118 22815679 - FroAMIRv0_Chr13g0235081 Fro13g01326 1326
13 22821487 22822156 - FroAMIRv0_Chr13g0235091 Fro13g01327 1327
14 19928102 19928752 + FroAMIRv0_Chr14g0253941 Fro14g01240 1240
14 19935624 19939142 - FroAMIRv0_Chr14g0253961 Fro14g01242 1242
14 19955067 19955750 - FroAMIRv0_Chr14g0253971 Fro14g01243 1243
1 59586612 59587271 + FsoAMIRv0_Chr01g0020371 Fso1g02038 2038
1 59596351 59599854 - FsoAMIRv0_Chr01g0020391 Fso1g02040 2040
12 57328427 57337804 - FsoAMIRv0_Chr12g0308571 Fso12g01894 1894
12 57344812 57345490 - FsoAMIRv0_Chr12g0308591 Fso12g01895 1895
2 15469124 15469828 + FtrAMIRv0_Chr02g0036861 Ftr2g00819 819
2 15555190 15558662 + FtrAMIRv0_Chr02g0036901 Ftr2g00823 823
2 15565205 15565858 - FtrAMIRv0_Chr02g0036921 Ftr2g00825 825
6 89590706 89591368 + FtrAMIRv0_Chr06g0184301 Ftr6g02282 2282
6 89613332 89613998 - FtrAMIRv0_Chr06g0184311 Ftr6g02283 2283
1 1451268 1453658 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000561 Hean1g00051 51
1 1451342 1452153 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000571 Hean1g00052 52
1 1454117 1456380 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000581 Hean1g00053 53
1 1458135 1463242 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000591 Hean1g00054 54
1 1465144 1466320 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000601 Hean1g00055 55
1 1469858 1471809 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000611 Hean1g00056 56
1 1590622 1593147 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000621 Hean1g00057 57
1 1592535 1593297 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000631 Hean1g00058 58
1 1639136 1642553 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000641 Hean1g00059 59
1 1686713 1694575 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000651 Hean1g00060 60
11 114398998 114399925 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0496631 Hean11g02575 2575
11 114555063 114565323 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0496661 Hean11g02578 2578
11 114592563 114593904 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0496671 Hean11g02579 2579
1 2834792 2835439 + >Htub.h1tg003317l.g23.t1 Hetu1g00058 58
1 2846792 2850307 - >Htub.h1tg003317l.g25.t1 Hetu1g00060 60
1 2892479 2893969 - >Htub.h1tg003317l.g26.t1 Hetu1g00061 61
2 3871386 3872033 + >Htub.h1tg002382l.g160.t1 Hetu2g00121 121
2 3880110 3885334 - >Htub.h1tg002382l.g162.t1 Hetu2g00123 123
2 3891710 3893010 - >Htub.h1tg002382l.g163.t1 Hetu2g00124 124
3 2861853 2862500 + >Htub.h1tg000837l.g85.t1 Hetu3g00059 59
3 2898294 2901909 - >Htub.h1tg000837l.g83.t1 Hetu3g00061 61
31 123660375 123661016 + >Htub.h1tg001293l.g245.t1 Hetu31g02166 2166
31 123723693 123728269 - >Htub.h1tg001293l.g247.t1 Hetu31g02168 2168
31 123770063 123770956 - >Htub.h1tg001293l.g248.t1 Hetu31g02169 2169
32 125777936 125778577 + >Htub.h1tg002994l.g211.t1 Hetu32g02171 2171
32 125949735 125954302 - >Htub.h1tg002994l.g212.t1 Hetu32g02172 2172
32 126084059 126084957 - >Htub.h1tg002994l.g218.t1 Hetu32g02178 2178
33 118173971 118174612 + >Htub.h1tg000866l.g462.t1 Hetu33g02099 2099
33 118345884 118350452 - >Htub.h1tg000866l.g460.t1 Hetu33g02101 2101
33 118480296 118481193 - >Htub.h1tg000866l.g459.t1 Hetu33g02102 2102
16 82735932 82736593 - KAD3338142.1 Mimi16g02072 2072
1 120793902 120794534 + KAI3829536.1 Smso1g03573 3573
1 120798862 120803186 - KAI3829537.1 Smso1g03574 3574
20 61247978 61248613 + KAI3742802.1 Smso20g01806 1806
20 61287003 61291386 - KAI3742804.1 Smso20g01808 1808
20 61303498 61304227 - KAI3742805.1 Smso20g01809 1809
28 14387891 14388588 + KAI3682794.1 Smso28g00514 514
28 14396559 14399282 + KAI3682795.1 Smso28g00515 515
28 14410605 14411255 - KAI3682796.1 Smso28g00516 516
1 128681367 128682296 + Streb.1G042730.1 Stre1g04273 4273
1 128711528 128715595 - Streb.1G042750.1 Stre1g04275 4275
1 128909246 128909890 + Streb.1G042860.1 Stre1g04286 4286
1 128941188 128945257 - Streb.1G042890.1 Stre1g04289 4289
1 129022521 129023831 - Streb.1G042920.1 Stre1g04292 4292
4 53174998 53175639 + >KAK1428106.1 Taer4g02324 2324
4 53190173 53193870 - >KAK1428108.1 Taer4g02326 2326
4 53211788 53214695 - >KAK1428109.1 Taer4g02327 2327
       
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