AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00876 ATGGGGAGCACTGGAACATCATGGAAACTCTCGGATCACCCGAAGCTACCCAAAGGCAAGACCATCGCCGTCGTCGTTTTGGATGGTTGGGGTGAAGCTGCACCCGACCAATACAATTGCATTCATGTCGCCGAAACACCAACCATGGATTCCCTCAAAAACAGTGCTCCTGATCGGTGGAGATTGGTGAGGGCTCACGGTACTGCCGTGGGGCTTCCCACAGATGATGATATGGGGAACAGTGAAGTCGGACATAATGCTCTTGGTGCCGGAAGAATTTATGCTCAAGGTGCAAAACTTGTGGATCTTGCTCTTGCCTCTGGGAAAATATATGAAGATGAGGGATTCAATTACATTAAGGAATCTTTTGCAAACAACACCCTGCATCTCATTGGATTGTTGAGTGATGGAGGTGTGCATTCTCGTATGGATCAGTTACAGTTGTTGCTCAAAGGTGCTAGTGAACGTGGTGCCAAGAGGATACGTGTTCATGTGCTTACTGATGGACGTGATGTGGTAGATGGTTCAAGTGTCGGTTTTGCTGAAACGCTCGAAAAGGATCTAGCAGAGTTGCGTGGTAAAGGCATTGATGCACAGGTTGCCTCTGGTGGTGGCCGCATGTATGTCACCATGGATCGTTATGAGAATGACTGGGAGGTTGTGAAACGAGGTTGGGATGCTCAGGTTCTTGGTGAAGCGCCACACAAGTTTAAGAATGTTGTTGAGGCAATCAAGAAGCTGAGGGAAGCACCCAATGCTAATGACCAATACTTGCCACCATTTGTGATTGTTGATGACAATGGAAAGCCTGTGGGTCCCATATTGGACGGTGATGCTGTTGTCACATTCAACTTTAGAGCAGATCGTATGACAATGCTTGCACAAGCCCTCGAGTATGAAAAGTTTGATAAATTTGACAGAGTGAGGTTCCCCAAAATCCGGTATGCTGGAATGCTTCAATATGATGGGGAATTGAAGCTTCCAAAACATTACCTTGTATCTCCTCCGTTGATAGAGAGGACCTCTGGTGAATATCTAGTTAATAATGGTATTCGAACCTTTGCGTGCAGTGAAACAGTTAAATTTGGTCATGTTACATTCTTTTGGAACGGTAATCGTTCTGGATATTTTAATTCAGAGTTAGAGGAATATGTGGAAATTCCGAGTGATAGTGGAATTACCTTCAATGTCCAACCAAAGATGAAGGCTCTGGAGATTGGTGAGAAGGCCCGTGATGCGATTCTCAGTCGCAAATTTGACCAGGTGAGGGTGAATATACCAAATGGTGACATGGTTGGGCACACTGGTGATATTGAGGCTACAATTGTGGCCTGCAAAGCTGCTGATCAAGCTGTTAAGATGATTCTTGATGCAATAGAGCAAGTGGGTGGAATATATGTGGTGACTGCAGATCATGGTAATGCAGAAGACATGGTGAAGAGAAATAAGAAGGGAGAGCCTCTTGTTGACAAGGATGGCAAAGTTCAGATCCAAACCTCACACACTCTTCAACCGGTGCCTGTTGCCATTGGAGGTCCTGGATTAGCACCAGGTGTGAAATTCCGCAAGGATGTACCGAATGGCGGGCTAGCAAATGTAGCTGCAACAGTGATGAATCTGCATGGTTTTGTGGCTCCTGATGACTATGAGACAACCCTTATTGAAGTTGTGGATTAA 1677 45.68 MGSTGTSWKLSDHPKLPKGKTIAVVVLDGWGEAAPDQYNCIHVAETPTMDSLKNSAPDRWRLVRAHGTAVGLPTDDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYEDEGFNYIKESFANNTLHLIGLLSDGGVHSRMDQLQLLLKGASERGAKRIRVHVLTDGRDVVDGSSVGFAETLEKDLAELRGKGIDAQVASGGGRMYVTMDRYENDWEVVKRGWDAQVLGEAPHKFKNVVEAIKKLREAPNANDQYLPPFVIVDDNGKPVGPILDGDAVVTFNFRADRMTMLAQALEYEKFDKFDRVRFPKIRYAGMLQYDGELKLPKHYLVSPPLIERTSGEYLVNNGIRTFACSETVKFGHVTFFWNGNRSGYFNSELEEYVEIPSDSGITFNVQPKMKALEIGEKARDAILSRKFDQVRVNIPNGDMVGHTGDIEATIVACKAADQAVKMILDAIEQVGGIYVVTADHGNAEDMVKRNKKGEPLVDKDGKVQIQTSHTLQPVPVAIGGPGLAPGVKFRKDVPNGGLANVAATVMNLHGFVAPDDYETTLIEVVD 558
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00876 558 Pfam Metalloenzyme superfamily 20 543 IPR006124 GO:0003824(InterPro)|GO:0046872(InterPro)
Fli3g00876 558 CDD iPGM 20 554 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Fli3g00876 558 Pfam BPG-independent PGAM N-terminus (iPGM-N) 102 322 IPR011258 GO:0004619(InterPro)|GO:0005737(InterPro)|GO:0006007(InterPro)|GO:0030145(InterPro)
Fli3g00876 558 SUPERFAMILY 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 96 331 IPR036646 GO:0004619(InterPro)|GO:0005737(InterPro)
Fli3g00876 558 Gene3D Alkaline Phosphatase, subunit A 23 546 IPR017850 -
Fli3g00876 558 SUPERFAMILY Alkaline phosphatase-like 21 548 IPR017850 -
Fli3g00876 558 PIRSF IPGAM 15 557 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Fli3g00876 558 Gene3D - 96 340 IPR036646 GO:0004619(InterPro)|GO:0005737(InterPro)
Fli3g00876 558 NCBIfam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 21 549 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Fli3g00876 558 PANTHER 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 8 555 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)|GO:0030145(PANTHER)|GO:0044262(PANTHER)|GO:0046537(PANTHER)
Fli3g00876 558 FunFam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 96 339 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00876 K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
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Event-related genes

Select Gene_1 Gene_2 Event_name
392416 Fli3g00876 Fli9g01373
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2384566 Fli Fli13g01133 Fli-Chr13:32684248 Fli3g00876 Fli-Chr3:24198402
2424572 Fli Fli3g00876 Fli-Chr3:24198402 Fli9g01373 Fli-Chr9:70869546