AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g00286 ATGTCAACCACCTCAACAACAACATGGAAACTGGCCGACCACCCAAAACTACCCAAAGGAAAGACGATCGCTGTCGTTGTTTTGGACGGTTGGGGTGAAGCTTCTCCCGACGAATACAATTGCATCCATGTCGCTGATACACCAACAATGGATTCCTTAAAAAACGGTGCTCCTGATCGGTGGAGATTGGTGAGGGCGCATGGTACTGCTGTGGGGCTTCCTACAGATGATGATATGGGGAACAGTGAAGTTGGACATAATGCTCTTGGTGCTGGAAGAATTTATGCTCAAGGGGCAAAACTTGTGGATCTTGCTCTTGCCTCTGGAAAAATATATGAAGATGAAGGTTTCAATTACATCAAGGAGTCTTTTGCCAACAACACCCTGCACCTTATTGGATTGGTGAGTGACGGGGGCGTGCACTCTCGCCTGGATCAGTTACAGTTGTTGCTTAAAGGTGCTAGTGAACGTGGTGCCAAGAGGATACGTGTTCATGTACTGACTGATGGTCGTGATGTTATAGATGGTTCAAGTGTCGGGTTTGCTGAAACGATTGAAAAATATCTAGCAGAGTTACGTGGTAAAGGCATTGATGCACAGGTTGCTTCTGGTGGAGGCCGCATGTATGTCACCATGGATCGTTATGAGAACGACTGGGAAGTTGTGAAACGAGGTTGGGATGCTCAGGTTCTTGGTGAAGCACCGCACAAATTCAAAAATGTTGTTGAGGCAATCAAGAAGCTGAGGGAAGCACCCAACGCTAATGACCAATACTTACCACCATTTGTGATTGTTGATGAGAACGGGAAGCCTGTGGGTCCCATAATGGATGGTGATGCTGTTGTCACGTTCAACTTCAGAGCAGATCGTATGACAATGCTTGCACAAGCACTCGAGTACGAAAAGTTTGATAAATTTGACAGAGTGAGGTTCCCCAAAATCCGCTATGCTGGTATGCTTCAATATGATGGCGAGTTGAAGCTTCCAAGTCATTACCTTGTTTCTCCTCCATTGATAGAGAGGACTTCTGGTGAATATCTGGTTAATAACGGTATACGTACCTTTGCTTGCAGTGAGAGGGTCAAATTTGGTCATGTCACGTTTTTCTGGAATGGGAACCGTTCCGGATATTTTAATAAAGAGTTGGAGGAATATGTTGAAATTCCAAGTGATAGTGGAATTACCTTTAATGTCCAACCAAAGATGAAGGCTCTGGAAATTGGTGAGAAGGCCCGTGATGCCATACTCAGTCGCCAGTTCGACCAGGTAAGGGTGAATATACCAAATGGTGACATGGTTGGGCATACCGGTGACATTGAAGCTACAATTGTGGCCTGTAAAGCTGCTGATCAAGCTGTTAAGATGATTCTTTATGCGGTAGAGCAAGTGGGTGGAATATATTTGGTGACTGCAGATCATGGTAATGCAGAAGACATGGTGAAGCGAAATAAGAAAGGAGAGCCTCTTGTTGACAAGGATGGCAAAGTTCAGATCCAAACCTCTCACACTCTTCAACCGGTGCCGGTTGCAATTGGAGGTCCTGGATTAGCAGCAGGTGTGAAATTCCGCAAGGATGTACCGAATGGTGGGCTAGCAAACGTAGCGGCAACAGTGATGAATTTGCATGGTTTTGTGGCTCCTGATGACTATGAGACAACCCTTATAGAAGTTGTGGATTAA 1680 45.48 MSTTSTTTWKLADHPKLPKGKTIAVVVLDGWGEASPDEYNCIHVADTPTMDSLKNGAPDRWRLVRAHGTAVGLPTDDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYEDEGFNYIKESFANNTLHLIGLVSDGGVHSRLDQLQLLLKGASERGAKRIRVHVLTDGRDVIDGSSVGFAETIEKYLAELRGKGIDAQVASGGGRMYVTMDRYENDWEVVKRGWDAQVLGEAPHKFKNVVEAIKKLREAPNANDQYLPPFVIVDENGKPVGPIMDGDAVVTFNFRADRMTMLAQALEYEKFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPLIERTSGEYLVNNGIRTFACSERVKFGHVTFFWNGNRSGYFNKELEEYVEIPSDSGITFNVQPKMKALEIGEKARDAILSRQFDQVRVNIPNGDMVGHTGDIEATIVACKAADQAVKMILYAVEQVGGIYLVTADHGNAEDMVKRNKKGEPLVDKDGKVQIQTSHTLQPVPVAIGGPGLAAGVKFRKDVPNGGLANVAATVMNLHGFVAPDDYETTLIEVVD 559
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g00286 559 Pfam Metalloenzyme superfamily 21 544 IPR006124 GO:0003824(InterPro)|GO:0046872(InterPro)
Amtr12g00286 559 Gene3D Alkaline Phosphatase, subunit A 24 547 IPR017850 -
Amtr12g00286 559 SUPERFAMILY Alkaline phosphatase-like 22 549 IPR017850 -
Amtr12g00286 559 Gene3D - 97 341 IPR036646 GO:0004619(InterPro)|GO:0005737(InterPro)
Amtr12g00286 559 Pfam BPG-independent PGAM N-terminus (iPGM-N) 103 323 IPR011258 GO:0004619(InterPro)|GO:0005737(InterPro)|GO:0006007(InterPro)|GO:0030145(InterPro)
Amtr12g00286 559 PANTHER 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 9 556 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)|GO:0030145(PANTHER)|GO:0044262(PANTHER)|GO:0046537(PANTHER)
Amtr12g00286 559 FunFam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 97 340 - -
Amtr12g00286 559 PIRSF IPGAM 16 558 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Amtr12g00286 559 NCBIfam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 22 550 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Amtr12g00286 559 SUPERFAMILY 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 97 332 IPR036646 GO:0004619(InterPro)|GO:0005737(InterPro)
Amtr12g00286 559 CDD iPGM 21 555 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g00286 K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
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Event-related genes

Select Gene_1 Gene_2 Event_name
12907 Amtr06g01666 Amtr12g00286
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
220833 Amtr Amtr06g01666 Amtr-Chr6:33762272 Amtr12g00286 Amtr-Chr12:8596537
297659 Amtr Amtr12g00286 Amtr-Chr12:8596537 Amtr08g05535 Amtr-Chr8:133965023