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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
  The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00061 . . . Dapi4g01837 Dapi20g01770 Hetu1g00063 Hetu2g00126 . Amtr12g00296 Smso1g03576 . Taer4g02330 Fro14g01246 Fso1g02049 Ftr2g00815 Fra18g01727 Fli3g00870 Stre1g04294 . Hean11g02582 . . . . Dapi20g01770 . . . . . . . . . . . . Stre1g04294 .
Hean1g00062 Cobi2g02243 Bial10g01275 Bial22g00867 Dapi4g01838 Dapi20g01771 Hetu1g00066 Hetu2g00127 Hetu3g00064 Amtr12g00298 Smso1g03577 Smso28g00511 Taer4g02331 Fro14g01247 . Ftr2g00814 Fra18g01728 Fli3g00868 Stre1g04295 Mimi16g02075 . . . . . . . . . . . . . . . . . . . .
Hean1g00063 Cobi2g02246 . . . . . . . Amtr12g00301 . . . . . . . . Stre1g04296 Mimi16g02076 . . . . . . . . . . . . . . . . . . . .
Hean1g00064 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00065 Cobi2g02247 . Bial22g00870 Dapi4g01841 Dapi20g01775 Hetu1g00070 Hetu2g00131 Hetu3g00066 Amtr12g00303 Smso1g03582 . Taer4g02335 Fro14g01249 . Ftr2g00808 Fra18g01730 Fli3g00858 Stre1g04297 Mimi16g02079 . . . . . . . . . . . . . . . . . . . .
Hean1g00066 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00067 . . . Dapi4g01842 Dapi20g01776 Hetu1g00071 Hetu2g00132 Hetu3g00067 Amtr12g00305 Smso1g03583 Smso28g00510 Taer4g02336 Fro14g01250 Fso1g02052 Ftr2g00806 Fra18g01731 Fli3g00857 Stre1g04298 Mimi16g02080 . . . . . . . . . . . . . . . . . . . .
Hean1g00068 Cobi2g02248 Bial10g01278 Bial22g00871 Dapi4g01843 Dapi20g01777 Hetu1g00073 Hetu2g00133 Hetu3g00068 Amtr12g00307 Smso1g03584 . Taer4g02337 Fro14g01251 Fso1g02053 . Fra18g01732 Fli3g00855 Stre1g04299 Mimi16g02081 . . . . . . . . . . . . . . . . . . . .
Hean1g00069 Cobi2g02249 . . . . . . . . . . . Fro14g01252 Fso1g02054 . Fra18g01733 Fli3g00854 . . . . . . . . . . . . . . . . . . . . . .
Hean1g00070 . Bial10g01280 Bial22g00873 Dapi4g01845 Dapi20g01779 Hetu1g00077 Hetu2g00135 Hetu3g00071 Amtr12g00309 Smso1g03586 Smso28g00506 Taer4g02339 Fro14g01253 Fso1g02058 . Fra18g01734 Fli3g00853 Stre1g04301 Mimi16g02083 . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
12 8989737 8990313 + AtrifAMIRv0_Chr12g0720281 Amtr12g00296 296
12 9011041 9019387 - AtrifAMIRv0_Chr12g0720301 Amtr12g00298 298
12 9087484 9089960 - AtrifAMIRv0_Chr12g0720331 Amtr12g00301 301
12 9173436 9177975 + AtrifAMIRv0_Chr12g0720351 Amtr12g00303 303
12 9216565 9218826 + AtrifAMIRv0_Chr12g0720371 Amtr12g00305 305
12 9263476 9272895 + AtrifAMIRv0_Chr12g0720391 Amtr12g00307 307
12 9277369 9278859 + AtrifAMIRv0_Chr12g0720411 Amtr12g00309 309
10 12747858 12750577 - g86894.t1 Bial10g01275 1275
10 12779538 12791058 + g86891.t1 Bial10g01278 1278
10 12795288 12796766 + g86889.t1 Bial10g01280 1280
22 8306944 8309805 - g147167.t1 Bial22g00867 867
22 8339808 8342833 + g147164.t1 Bial22g00870 870
22 8343961 8351357 + g147163.t1 Bial22g00871 871
22 8358859 8360337 + g147161.t1 Bial22g00873 873
2 68996827 68999573 - h2tg000016l_1.g5003.t1 Cobi2g02243 2243
2 69050500 69052391 + h2tg000016l_1.g5000.t1 Cobi2g02246 2246
2 69072628 69075109 + h2tg000016l_1.g4999.t1 Cobi2g02247 2247
2 69095597 69101672 + h2tg000016l_1.g4998.t1 Cobi2g02248 2248
2 69102604 69104466 - h2tg000016l_1.g4997.t1 Cobi2g02249 2249
4 115376616 115376840 + h1tg000180l.g132151.t1 Dapi4g01837 1837
4 115380353 115390832 - h1tg000180l.g132152.t1 Dapi4g01838 1838
4 115521582 115527090 + h1tg000180l.g132155.t1 Dapi4g01841 1841
4 115536941 115539605 + h1tg000180l.g132156.t1 Dapi4g01842 1842
4 115541465 115550893 + h1tg000180l.g132157.t1 Dapi4g01843 1843
4 115575310 115576884 + h1tg000180l.g132159.t1 Dapi4g01845 1845
20 106485687 106486149 + h1tg000033l.g91486.t1 Dapi20g01770 1770
20 106488497 106498076 - h1tg000033l.g91487.t1 Dapi20g01771 1771
20 106640485 106645895 + h1tg000033l.g91491.t1 Dapi20g01775 1775
20 106657462 106660206 + h1tg000033l.g91492.t1 Dapi20g01776 1776
20 106661560 106671022 + h1tg000033l.g91493.t1 Dapi20g01777 1777
20 106676620 106678194 + h1tg000033l.g91495.t1 Dapi20g01779 1779
3 23608881 23610371 - FliAMIRv0_Chr03g0081221 Fli3g00853 853
3 23616277 23618145 + FliAMIRv0_Chr03g0081231 Fli3g00854 854
3 23620513 23630333 - FliAMIRv0_Chr03g0081241 Fli3g00855 855
3 23679657 23686364 - FliAMIRv0_Chr03g0081261 Fli3g00857 857
3 23688724 23693173 - FliAMIRv0_Chr03g0081271 Fli3g00858 858
3 23942952 23955252 + FliAMIRv0_Chr03g0081371 Fli3g00868 868
3 23984162 23984594 - FliAMIRv0_Chr03g0081391 Fli3g00870 870
18 65331830 65332262 + FraAMIRv0_Chr18g0359241 Fra18g01727 1727
18 65342386 65356984 - FraAMIRv0_Chr18g0359251 Fra18g01728 1728
18 65453619 65457286 + FraAMIRv0_Chr18g0359271 Fra18g01730 1730
18 65459604 65464125 + FraAMIRv0_Chr18g0359281 Fra18g01731 1731
18 65468888 65479090 + FraAMIRv0_Chr18g0359291 Fra18g01732 1732
18 65481436 65483304 - FraAMIRv0_Chr18g0359301 Fra18g01733 1733
18 65486895 65488385 + FraAMIRv0_Chr18g0359311 Fra18g01734 1734
14 19999042 19999461 + FroAMIRv0_Chr14g0254001 Fro14g01246 1246
14 20006788 20017702 - FroAMIRv0_Chr14g0254011 Fro14g01247 1247
14 20054167 20059284 + FroAMIRv0_Chr14g0254031 Fro14g01249 1249
14 20063134 20066989 + FroAMIRv0_Chr14g0254041 Fro14g01250 1250
14 20070145 20079958 + FroAMIRv0_Chr14g0254051 Fro14g01251 1251
14 20082302 20084170 - FroAMIRv0_Chr14g0254061 Fro14g01252 1252
14 20086851 20088356 + FroAMIRv0_Chr14g0254071 Fro14g01253 1253
1 59775981 59776416 + FsoAMIRv0_Chr01g0020481 Fso1g02049 2049
1 59890754 59899377 + FsoAMIRv0_Chr01g0020511 Fso1g02052 2052
1 59956112 59966303 + FsoAMIRv0_Chr01g0020521 Fso1g02053 2053
1 59969255 59971132 - FsoAMIRv0_Chr01g0020531 Fso1g02054 2054
1 59979488 59980255 + FsoAMIRv0_Chr01g0020571 Fso1g02058 2058
2 15120747 15130072 - FtrAMIRv0_Chr02g0036731 Ftr2g00806 806
2 15139995 15143899 - FtrAMIRv0_Chr02g0036751 Ftr2g00808 808
2 15329820 15348230 + FtrAMIRv0_Chr02g0036811 Ftr2g00814 814
2 15354488 15354929 - FtrAMIRv0_Chr02g0036821 Ftr2g00815 815
1 1695568 1696711 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000661 Hean1g00061 61
1 1698493 1703988 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000671 Hean1g00062 62
1 1725114 1728066 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000691 Hean1g00063 63
1 1739024 1740693 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000701 Hean1g00064 64
1 1788187 1791722 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000711 Hean1g00065 65
1 1792722 1795818 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000731 Hean1g00066 66
1 1809860 1813750 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000761 Hean1g00067 67
1 1818408 1829952 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000771 Hean1g00068 68
1 1830326 1832188 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000781 Hean1g00069 69
1 1841068 1842573 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000791 Hean1g00070 70
11 114899881 114900433 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0496701 Hean11g02582 2582
1 3057391 3059377 + >Htub.h1tg003317l.g28.t1 Hetu1g00063 63
1 3175837 3179351 - >Htub.h1tg003317l.g31.t1 Hetu1g00066 66
1 3317746 3320989 + >Htub.h1tg003317l.g35.t1 Hetu1g00070 70
1 3324584 3326560 + >Htub.h1tg003317l.g36.t1 Hetu1g00071 71
1 3331116 3342850 + >Htub.h1tg003317l.g38.t1 Hetu1g00073 73
1 3375815 3377320 + >Htub.h1tg003317l.g42.t1 Hetu1g00077 77
2 3989242 3991849 + >Htub.h1tg002382l.g165.t1 Hetu2g00126 126
2 3996192 3999510 - >Htub.h1tg002382l.g166.t1 Hetu2g00127 127
2 4165065 4168296 + >Htub.h1tg002382l.g170.t1 Hetu2g00131 131
2 4174228 4176188 + >Htub.h1tg002382l.g171.t1 Hetu2g00132 132
2 4177202 4191441 + >Htub.h1tg002382l.g172.t1 Hetu2g00133 133
2 4194786 4198361 + >Htub.h1tg002382l.g174.t1 Hetu2g00135 135
3 3102607 3112203 - >Htub.h1tg004213l.g214.t1 Hetu3g00064 64
3 3236977 3240191 + >Htub.h1tg004213l.g216.t1 Hetu3g00066 66
3 3274509 3275920 + >Htub.h1tg004213l.g217.t1 Hetu3g00067 67
3 3283734 3293790 + >Htub.h1tg004213l.g218.t1 Hetu3g00068 68
3 3304357 3305862 + >Htub.h1tg004213l.g221.t1 Hetu3g00071 71
16 82803186 82815844 - KAD3338145.1 Mimi16g02075 2075
16 82822049 82824768 - KAD3338146.1 Mimi16g02076 2076
16 82864065 82869856 + KAD3338149.1 Mimi16g02079 2079
16 82871752 82875354 + KAD3338150.1 Mimi16g02080 2080
16 82885297 82905402 + KAD3338151.1 Mimi16g02081 2081
16 82911975 82913372 + KAD3338153.1 Mimi16g02083 2083
1 120822682 120823394 + KAI3829539.1 Smso1g03576 3576
1 120840148 120851891 - KAI3829540.1 Smso1g03577 3577
1 120941724 120947388 + KAI3829545.1 Smso1g03582 3582
1 120953753 120954813 + KAI3829546.1 Smso1g03583 3583
1 120961782 120976300 + KAI3829547.1 Smso1g03584 3584
1 120984323 120985906 + KAI3829549.1 Smso1g03586 3586
28 14013306 14014850 - KAI3682786.1 Smso28g00506 506
28 14096146 14096774 - KAI3682790.1 Smso28g00510 510
28 14202171 14205100 + KAI3682791.1 Smso28g00511 511
1 129046748 129047469 + Streb.1G042940.1 Stre1g04294 4294
1 129050278 129054660 - Streb.1G042950.1 Stre1g04295 4295
1 129058552 129061993 - Streb.1G042960.1 Stre1g04296 4296
1 129101535 129107524 + Streb.1G042970.1 Stre1g04297 4297
1 129121070 129123668 + Streb.1G042980.1 Stre1g04298 4298
1 129124658 129135173 + Streb.1G042990.1 Stre1g04299 4299
1 129170241 129176518 + Streb.1G043010.1 Stre1g04301 4301
4 53272507 53272842 + >KAK1428112.1 Taer4g02330 2330
4 53276925 53283435 - >KAK1428113.1 Taer4g02331 2331
4 53332964 53336915 + >KAK1428117.1 Taer4g02335 2335
4 53355677 53358949 + >KAK1428118.1 Taer4g02336 2336
4 53362344 53372438 + >KAK1428119.1 Taer4g02337 2337
4 53379495 53380904 + >KAK1428121.1 Taer4g02339 2339
       
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