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AGRP

Asteraceae Genomic Research Platform

AGRP Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial22g00867 ATGGGATTATTAAAGAGTAAAGTGCAAAGTATTGTGGTTTCTGGGTGGAAAAGAAATAATGGCTTATTGTTGTCTTTATCAAGGACTATTAATACCTTTGCAGCCTGTTATGATAATAACAATAACCGGATATTGAAGTCGCCTTCTCTTGTTTCGCTTGACTTCCCTGATGTATGGAGTACTAGCTCTGCCGGTTATACTGAACCGTCTACTTACAAACTCGCTAGTGATCATACTGCTAGAGTAATCAACGGAAAACAAATCTCCGAGGAAATCATATCAAAAGTAGCCACTGAAGTAACAAGAATGAAGAAAACAATCGGCAAAGTTCCAGGACTCGGTGTAATTCTAGTAGGCGACAGAAAGGATTCCCTAACATACGTTCGTAACAAGATAAACGCATGCGAAGAGGCCGGGATCAACTTCAAACTAACCGAATTTCCAGACACATGTACCGAACATGAAGTTTGTGATGCCATAATGAAATTTAATTCAGACCCATCTTTTCACGGTATCCTTGTGCAGCTTCCTCTTCCTCAGCATTTGAATGAAGAGAAGATTGTGGGTGTGTTGAAATTGGAAAAAGATGTGGATGGTTTTCATCCAATGAATATGGGGAATTTAGCTATGAGGGGGCGGGAACCGTTATTCATCCCGTGCACGCCAAAAGGTTGTGTTGAGTTGTTGATGAGATATGGTGTGGAGATTATGGGTAAGAATGTGGTTGTTATCGGAAGAAGCAATATTGTTGGTTTACCCGCGTCCTTGCTGTTACAGAGGCACCATGCAACAGTTACCATTGTGACTGCATTAACACCAAACCCTGAAGAAATCACACGTGAAGCTGATATATTAATAAGCGGGGTAGGAGTCCCGAATATGGTTCGGGGAAGCTGGGTGAAGCCTGGCGCCGTGGTGGTTGATGTTGGAACTTATCCAATCGAGGACCCGAGTTGTGAGCAAGGGTATCGGCTGATAGGTGATGTGTGTTATGAAGAAGCATCAAGAGTAGCTTCTTTGATCACTCCTGTTCCGGGAGGGGTGGGGCCCATGACGGTCGCAATGCTGCTTTGCAACACCCTTGAATCAGCTACACGTAAGTACAATTTTGTTTAA 1116 43.19 MGLLKSKVQSIVVSGWKRNNGLLLSLSRTINTFAACYDNNNNRILKSPSLVSLDFPDVWSTSSAGYTEPSTYKLASDHTARVINGKQISEEIISKVATEVTRMKKTIGKVPGLGVILVGDRKDSLTYVRNKINACEEAGINFKLTEFPDTCTEHEVCDAIMKFNSDPSFHGILVQLPLPQHLNEEKIVGVLKLEKDVDGFHPMNMGNLAMRGREPLFIPCTPKGCVELLMRYGVEIMGKNVVVIGRSNIVGLPASLLLQRHHATVTIVTALTPNPEEITREADILISGVGVPNMVRGSWVKPGAVVVDVGTYPIEDPSCEQGYRLIGDVCYEEASRVASLITPVPGGVGPMTVAMLLCNTLESATRKYNFV 371
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial22g00867 371 FunFam C-1-tetrahydrofolate synthase, cytoplasmic, putative 85 230 - -
Bial22g00867 371 Gene3D - 83 344 - -
Bial22g00867 371 Pfam Tetrahydrofolate dehydrogenase-cyclohydrolase, NAD(P)-binding domain 201 367 IPR020631 GO:0004488(InterPro)
Bial22g00867 371 Gene3D Leucine Dehydrogenase, chain A, domain 1 85 362 - -
Bial22g00867 371 PANTHER C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED 79 369 - GO:0004477(PANTHER)|GO:0004488(PANTHER)|GO:0005829(PANTHER)|GO:0035999(PANTHER)
Bial22g00867 371 Hamap Bifunctional protein FolD [folD]. 80 368 IPR000672 GO:0004488(InterPro)
Bial22g00867 371 ProSitePatterns Tetrahydrofolate dehydrogenase-cyclohydrolase signature 2. 345 353 IPR020867 GO:0003824(InterPro)
Bial22g00867 371 FunFam Bifunctional protein FolD 217 344 - -
Bial22g00867 371 CDD NAD-bind-m-THF-DH-Cyclohyd 194 364 IPR020631 GO:0004488(InterPro)
Bial22g00867 371 Pfam Tetrahydrofolate dehydrogenase-cyclohydrolase, catalytic domain 83 198 IPR020630 GO:0004488(InterPro)
Bial22g00867 371 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 200 366 IPR036291 -
Bial22g00867 371 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 152 179 IPR000672 GO:0004488(InterPro)
Bial22g00867 371 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 234 254 IPR000672 GO:0004488(InterPro)
Bial22g00867 371 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 111 133 IPR000672 GO:0004488(InterPro)
Bial22g00867 371 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 324 340 IPR000672 GO:0004488(InterPro)
Bial22g00867 371 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 187 208 IPR000672 GO:0004488(InterPro)
Bial22g00867 371 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 283 312 IPR000672 GO:0004488(InterPro)
Bial22g00867 371 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 341 359 IPR000672 GO:0004488(InterPro)
Bial22g00867 371 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 80 199 IPR046346 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial22g00867 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
182222 Bial10g01275 Bial22g00867
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:3759615 Bial22g00867 Bial-Chr22:8306944 dispersed
Bial Bial-Chr22:8306944 Bial4g00326 Bial-Chr4:3977126 dispersed
Bial Bial-Chr10:12747858 Bial22g00867 Bial-Chr22:8306944 wgd