AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi20g01779 ATGAAGATTGATAATCACATTCTTGTTATAATCTCCATTGTTTCTCTCTTTTTTGTTATCTTAACAGAAGGTAGGGATATCTCACCGCCCTCGTCAAATGAAGACGACGATGAACTATATAATCAAGTTAAGAAGGCGTTTGGCCCGGCTTTTAATGGAGCCAAAGAGAAGTTTGGTCCAATTTCATCATTGGATTTTGATAATTTTGAAGAGGCTAAAAATGCATTTGGTCCAATTCCATCAGTTGATGAAGCTACAGAGGCTTTAGGCCCGGCTTCATCTGCGATTCTAGACAAAGCAAAAGAAGCCATGGGCCCGATTTCACCTGCGACTTTAGATAATGCAAAAGAGGCTCTAGCCCCTGCAGCAGAGGCCCTAAGCCCGATTTCACCTGCGGCTTTAGATAAAGCAAAAGAGGCTCTCGGCCCGTCTTCATCCGGAATGTTAGATAAGGCTAAAGACAAAATTAACTCGCTTAAATCTTGGATTACTAAAAACAAGGAAGAAACGTCTTCTGAAGACGAAGACGAAGACGAGGACGAGGACGAAGACGAAGACGAAAACGAGCATGGGCCTTCAGATGAGAAAGAGCCACCAACCCCTAGCTCCTCACTTTTGGACCCGTACGGGGTCTTAACCGGTGCTAAACAAAAATTTGATTCACTTATGGACTCCATTACCGAAGAAGAGAAAGAACAAATATCACCGTCGGTGGTCGAGGAAGCCGAAAAGGAATCTAGCCCGACTTCTTCCAAAGATCCATCAGACAAAGCCCAAAACAATATGGCCCCAACCCCAACCCCAACTCCATCTTCAGCTCCTGATTCATCTGAAGGTTCAGATCTTTCTAAAATCATAGATAAGGCTAAAAAATTCAACCCATTTAAACGTTTAAATACCGAAAACAAAGAGGAAACATCTTCTGATTCACCTTCCATTTCAGTCAAAGCCCCAAACGAACAAGGCCCGAATTCTTTGTCCGACGACAATGCATCGGGCCCGAGCCTGATATCTGCCCCTGCACCCGCCCCTGTTTCGCCTTCAACTTTCAAGGAAGCAAAAGACGCGATAGGTTCGTATTCTTCTAAAGCTGTGGATGCAGCAAAAGAAAAGTTTAGCTCGATTTCAACATATTTATCCCAAAATAAACTGCAAGAACCACCTGAATTAGACATTAAGCTCCATAAGGCTCCTGTATTCATTGACCATGATGTTGCTTTGGCTGTTGAGTCAATGATTAAACAAGCACAAGCAAATTCACAGTTGGCTATGGACGCGGCAAAAACATTAGCGAGCGATCCGACTATGGATCGATCGGGTGATGGGAAATGTGTAGAGAAATGTATGGCTGATTTTGAAACCTGCACTCGAAAACTGAGCAAGGCTTTGGAAGAACTTAAGGCTCGTAATGTGGAATTGGTCACAGATGATATTGGTGCAGTTGAAGGAGAAATAAAGGAATGTCAAAAGTGCTTTCTGGAGAATACAAAAATGCAGTCTCCGTTTGGTGATTTGGAGGCGTCTACAATCAAGGCTACTCAAGAATGCTTAAAAGTTCTAGATCATTCTGGCTGA 1575 43.11 MKIDNHILVIISIVSLFFVILTEGRDISPPSSNEDDDELYNQVKKAFGPAFNGAKEKFGPISSLDFDNFEEAKNAFGPIPSVDEATEALGPASSAILDKAKEAMGPISPATLDNAKEALAPAAEALSPISPAALDKAKEALGPSSSGMLDKAKDKINSLKSWITKNKEETSSEDEDEDEDEDEDEDENEHGPSDEKEPPTPSSSLLDPYGVLTGAKQKFDSLMDSITEEEKEQISPSVVEEAEKESSPTSSKDPSDKAQNNMAPTPTPTPSSAPDSSEGSDLSKIIDKAKKFNPFKRLNTENKEETSSDSPSISVKAPNEQGPNSLSDDNASGPSLISAPAPAPVSPSTFKEAKDAIGSYSSKAVDAAKEKFSSISTYLSQNKLQEPPELDIKLHKAPVFIDHDVALAVESMIKQAQANSQLAMDAAKTLASDPTMDRSGDGKCVEKCMADFETCTRKLSKALEELKARNVELVTDDIGAVEGEIKECQKCFLENTKMQSPFGDLEASTIKATQECLKVLDHSG 524
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi20g01779 524 MobiDBLite consensus disorder prediction 161 349 - -
Dapi20g01779 524 SUPERFAMILY Plant invertase-pectin methylesterase inhibitor 408 517 IPR035513 -
Dapi20g01779 524 MobiDBLite consensus disorder prediction 281 304 - -
Dapi20g01779 524 MobiDBLite consensus disorder prediction 171 191 - -
Dapi20g01779 524 Gene3D Invertase-pectin methylesterase inhibitor family protein 394 522 IPR035513 -
Dapi20g01779 524 MobiDBLite consensus disorder prediction 222 251 - -
Dapi20g01779 524 MobiDBLite consensus disorder prediction 305 334 - -
Dapi20g01779 524 MobiDBLite consensus disorder prediction 252 279 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi20g01779 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
78281 Dapi20g01779 Dapi27g00192
260268 Dapi20g01779 Dapi4g01845
264871 Dapi4g01845 Dapi20g01779
385572 Dapi20g01779 Dapi4g01845
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1984977 Dapi Dapi11g00200 Dapi-Chr11:3295258 Dapi20g01779 Dapi-Chr20:106676620
2024625 Dapi Dapi20g01779 Dapi-Chr20:106676620 Dapi27g00192 Dapi-Chr27:3486078
2026282 Dapi Dapi20g01779 Dapi-Chr20:106676620 Dapi4g01845 Dapi-Chr4:115575310