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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
  The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00071 . . . Dapi4g01846 . Hetu1g00078 Hetu2g00136 Hetu3g00072 Amtr12g00310 Smso1g03587 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00072 . . . . Dapi20g01782 Hetu1g00079 Hetu2g00137 Hetu3g00073 . Smso1g03588 Smso28g00505 . . . . . . . . Hean11g02588 . Bial12g02727 Bial24g02574 . Dapi31g02056 Hetu32g02187 Hetu31g02179 Hetu33g02125 Amtr07g06372 . Smso20g01815 . . . . . . . .
Hean1g00073 . . . . . Hetu1g00080 . . Amtr12g00311 . Smso28g00504 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00074 Cobi2g02250 . . Dapi4g01847 Dapi20g01783 . Hetu2g00138 Hetu3g00074 . Smso1g03589 Smso28g00502 . . . . . . Stre1g04302 . . . . . . . . . . . . . . . . . . . . .
Hean1g00075 Cobi2g02252 Bial10g01281 Bial22g00874 Dapi4g01848 Dapi20g01786 Hetu1g00083 Hetu2g00139 Hetu3g00076 Amtr12g00318 Smso1g03590 Smso28g00500 . Fro14g01258 Fso1g02066 . Fra18g01740 Fli3g00845 Stre1g04304 Mimi16g02084 . . . . . . . . . . . . . . . . . . . .
Hean1g00076 Cobi2g02253 Bial10g01282 Bial22g00875 Dapi4g01849 Dapi20g01787 . . . Amtr12g00319 Smso1g03591 Smso28g00499 . . . . . . Stre1g04305 Mimi16g02085 Hean11g02589 Cobi6g01038 Bial12g02728 Bial24g02575 Dapi4g01849 Dapi31g02057 . . . Amtr07g06369 . Smso20g01816 Taer4g02352 Fro13g01334 . . Fra13g01446 Fli9g01380 Stre1g04305 Mimi16g00581
Hean1g00077 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00078 Cobi2g02255 Bial10g01285 Bial22g00878 . . Hetu1g00087 Hetu2g00146 Hetu3g00081 Amtr12g00327 Smso1g03594 . . . . . . . Stre1g04307 Mimi16g02087 Hean11g02593 Cobi6g01036 Bial12g02730 Bial24g02577 Dapi4g01851 Dapi31g02059 Hetu32g02195 . Hetu33g02139 . . Smso20g01818 . . . . . . Stre1g04307 Mimi16g02087
Hean1g00079 . Bial10g01286 Bial22g00880 . . Hetu1g00088 Hetu2g00147 Hetu3g00082 . . Smso28g00497 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00080 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
7 135936958 135942445 + AtrifAMIRv0_Chr07g0515161 Amtr07g06369 6369
7 135945640 135946760 - AtrifAMIRv0_Chr07g0515191 Amtr07g06372 6372
12 9279123 9279533 - AtrifAMIRv0_Chr12g0720421 Amtr12g00310 310
12 9282072 9284484 - AtrifAMIRv0_Chr12g0720431 Amtr12g00311 311
12 9369599 9393631 + AtrifAMIRv0_Chr12g0720491 Amtr12g00318 318
12 9393876 9397194 - AtrifAMIRv0_Chr12g0720511 Amtr12g00319 319
12 9623502 9628730 + AtrifAMIRv0_Chr12g0720591 Amtr12g00327 327
10 12810402 12810815 + g86888.t1 Bial10g01281 1281
10 12811037 12814109 - g86887.t1 Bial10g01282 1282
10 12842540 12847210 + g86884.t1 Bial10g01285 1285
10 12847494 12850139 - g86883.t1 Bial10g01286 1286
12 57447854 57450643 + g35926.t1 Bial12g02727 2727
12 57451702 57455569 - g35927.t1 Bial12g02728 2728
12 57470280 57476039 + g35929.t1 Bial12g02730 2730
22 8374655 8375068 + g147160.t1 Bial22g00874 874
22 8375290 8378159 - g147159.t1 Bial22g00875 875
22 8395683 8400232 + g147156.t1 Bial22g00878 878
22 8402177 8403185 - g147154.t1 Bial22g00880 880
24 56567978 56571831 + g68240.t1 Bial24g02574 2574
24 56572677 56576557 - g68241.t1 Bial24g02575 2575
24 56602272 56608224 + g68243.t1 Bial24g02577 2577
2 69134711 69138786 - h2tg000016l_1.g4996.t1 Cobi2g02250 2250
2 69179956 69180693 + h2tg000016l_1.g4994.t1 Cobi2g02252 2252
2 69180837 69182884 - h2tg000016l_1.g4993.t1 Cobi2g02253 2253
2 69206085 69210189 + h2tg000016l_1.g4991.t1 Cobi2g02255 2255
6 8307971 8313927 - h2tg000031l_1.g19349.t1 Cobi6g01036 1036
6 8334381 8337864 + h2tg000031l_1.g19351.t1 Cobi6g01038 1038
4 115577283 115577720 - h1tg000180l.g132160.t1 Dapi4g01846 1846
4 115600845 115604182 - h1tg000180l.g132161.t1 Dapi4g01847 1847
4 115714901 115715740 + h1tg000180l.g132162.t1 Dapi4g01848 1848
4 115715926 115718873 - h1tg000180l.g132163.t1 Dapi4g01849 1849
4 115892930 115897395 + h1tg000180l.g132165.t1 Dapi4g01851 1851
20 106737629 106740475 + h1tg000033l.g91498.t1 Dapi20g01782 1782
20 106740645 106744654 - h1tg000033l.g91499.t1 Dapi20g01783 1783
20 106840185 106841549 + h1tg000033l.g91502.t1 Dapi20g01786 1786
20 106841738 106844532 - h1tg000033l.g91503.t1 Dapi20g01787 1787
31 101538139 101539209 + h2tg000063l.g12141.t1 Dapi31g02056 2056
31 101540385 101546682 - h2tg000063l.g12142.t1 Dapi31g02057 2057
31 101672748 101675968 + h2tg000063l.g12144.t1 Dapi31g02059 2059
3 23067273 23068595 - FliAMIRv0_Chr03g0081141 Fli3g00845 845
9 71017658 71022689 - FliAMIRv0_Chr09g0221461 Fli9g01380 1380
13 42714625 42718622 + FraAMIRv0_Chr13g0267541 Fra13g01446 1446
18 65718676 65719996 + FraAMIRv0_Chr18g0359371 Fra18g01740 1740
13 22882282 22886537 - FroAMIRv0_Chr13g0235161 Fro13g01334 1334
14 20157489 20158591 + FroAMIRv0_Chr14g0254121 Fro14g01258 1258
1 60214456 60215750 + FsoAMIRv0_Chr01g0020651 Fso1g02066 2066
1 1843535 1844477 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000811 Hean1g00071 71
1 1845938 1848506 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000821 Hean1g00072 72
1 1847943 1851650 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000831 Hean1g00073 73
1 1854739 1855673 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000841 Hean1g00074 74
1 1874397 1878399 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000871 Hean1g00075 75
1 1877905 1883707 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000881 Hean1g00076 76
1 1887034 1888651 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000891 Hean1g00077 77
1 1901300 1907919 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000901 Hean1g00078 78
1 1908267 1908779 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000911 Hean1g00079 79
1 1925625 1926600 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000921 Hean1g00080 80
11 115288649 115290545 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0496771 Hean11g02588 2588
11 115292335 115297889 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0496781 Hean11g02589 2589
11 116058340 116066265 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0496821 Hean11g02593 2593
1 3378251 3378619 - >Htub.h1tg003317l.g43.t1 Hetu1g00078 78
1 3392148 3392543 + >Htub.h1tg003317l.g44.t1 Hetu1g00079 79
1 3392682 3395719 - >Htub.h1tg003317l.g45.t1 Hetu1g00080 80
1 3467812 3468261 + >Htub.h1tg003317l.g48.t1 Hetu1g00083 83
1 3594562 3599808 + >Htub.h1tg003317l.g52.t1 Hetu1g00087 87
1 3619366 3620193 + >Htub.h1tg003317l.g53.t1 Hetu1g00088 88
2 4199063 4199470 - >Htub.h1tg002382l.g175.t1 Hetu2g00136 136
2 4204829 4205194 + >Htub.h1tg002382l.g176.t1 Hetu2g00137 137
2 4205397 4208339 - >Htub.h1tg002382l.g177.t1 Hetu2g00138 138
2 4259641 4262892 + >Htub.h1tg002382l.g179.t1 Hetu2g00139 139
2 4504814 4510028 + >Htub.h1tg002382l.g186.t1 Hetu2g00146 146
2 4543500 4546045 + >Htub.h1tg002382l.g187.t1 Hetu2g00147 147
3 3306680 3307087 - >Htub.h1tg004213l.g222.t1 Hetu3g00072 72
3 3324387 3324752 + >Htub.h1tg004213l.g223.t1 Hetu3g00073 73
3 3324923 3328040 - >Htub.h1tg004213l.g224.t1 Hetu3g00074 74
3 3373908 3378697 + >Htub.h1tg004213l.g226.t1 Hetu3g00076 76
3 3484108 3489840 + >Htub.h1tg004213l.g231.t1 Hetu3g00081 81
3 3490571 3491398 + >Htub.h1tg004213l.g232.t1 Hetu3g00082 82
31 124711922 124713320 + >Htub.h1tg001293l.g260.t1 Hetu31g02179 2179
32 126851792 126853190 + >Htub.h1tg002994l.g228.t1 Hetu32g02187 2187
32 127257210 127262737 + >Htub.h1tg003616l.g28.t1 Hetu32g02195 2195
33 119219717 119221115 + >Htub.h1tg000866l.g435.t1 Hetu33g02125 2125
33 119582041 119587567 + >Htub.h1tg000866l.g421.t1 Hetu33g02139 2139
16 20078062 20084683 - KAD3336651.1 Mimi16g00581 581
16 82977967 82980928 + KAD3338154.1 Mimi16g02084 2084
16 82981007 82984712 - KAD3338155.1 Mimi16g02085 2085
16 83008996 83010602 + KAD3338157.1 Mimi16g02087 2087
1 120986929 120987348 - KAI3829550.1 Smso1g03587 3587
1 120997671 121001081 + KAI3829551.1 Smso1g03588 3588
1 121001241 121004319 - KAI3829552.1 Smso1g03589 3589
1 121026298 121031179 + KAI3829553.1 Smso1g03590 3590
1 121031355 121034292 - KAI3829554.1 Smso1g03591 3591
1 121113060 121123298 + KAI3829557.1 Smso1g03594 3594
20 61436714 61438004 + KAI3742811.1 Smso20g01815 1815
20 61439860 61445966 - KAI3742812.1 Smso20g01816 1816
20 61582773 61589464 + KAI3742814.1 Smso20g01818 1818
28 13794098 13795312 + KAI3682777.1 Smso28g00497 497
28 13862000 13865109 + KAI3682779.1 Smso28g00499 499
28 13865323 13869472 - KAI3682780.1 Smso28g00500 500
28 13976655 13979820 + KAI3682782.1 Smso28g00502 502
28 14001380 14004545 + KAI3682784.1 Smso28g00504 504
28 14004707 14004979 - KAI3682785.1 Smso28g00505 505
1 129177496 129180139 - Streb.1G043020.1 Stre1g04302 4302
1 129203812 129205257 + Streb.1G043040.1 Stre1g04304 4304
1 129205520 129208494 - Streb.1G043050.1 Stre1g04305 4305
1 129224687 129230825 + Streb.1G043070.1 Stre1g04307 4307
4 53532354 53534891 - >KAK1428134.1 Taer4g02352 2352
       
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