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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02087 ATGAAGTACGTTTTGGTCACCGGCGGGGTGGTTAGTGGCCTCGGCAAGGGCGTCACCGCCAGTAGCATTGGCGTCGTTCTCAAGGCCTGTGGCCTTCGCGTCACCTCAATCAAAATAGATCCATACTTGAACACAGATGCTGGTACTATGTCCCCATTTGAACATGGGGAGGTTTTTGTTCTTGATGATGGGGGAGAGGTCGATCTGGATCTCGGTAACTACGAACGGTTCTTAGACGTGAGACTTACCAGGGATAACAACATAACCACTGGAAAGATCTATCAGTCTGTTCTAGAGAAGGAACGAAAGGGAGATTACCTTGGAAAGACTGTTGTCCCACACATAACGGATGCTATTAAAGATTGGATCGAGTCTGTTTCTGCTATTCCTGTTGATGGCAAAGAAGGCCCGGCAGATGTTTGTGTTATAGAATTAGGAGGGACAGTTGGTGACATTGAGTCTATGCCCTTCATAGAGGCTTTGAGGCAGTTATTTTTCTCCGCAGTGAGTTTGTATGGTTGA 522 47.13 MKYVLVTGGVVSGLGKGVTASSIGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRLTRDNNITTGKIYQSVLEKERKGDYLGKTVVPHITDAIKDWIESVSAIPVDGKEGPADVCVIELGGTVGDIESMPFIEALRQLFFSAVSLYG 173
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02087 173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 167 IPR027417 -
Mimi16g02087 173 Gene3D - 1 170 IPR027417 -
Mimi16g02087 173 PANTHER CTP SYNTHASE 1 167 IPR004468 GO:0003883(PANTHER)|GO:0003883(InterPro)|GO:0006221(InterPro)|GO:0006241(PANTHER)|GO:0019856(PANTHER)|GO:0042802(PANTHER)
Mimi16g02087 173 Pfam CTP synthase N-terminus 2 166 IPR017456 GO:0003883(InterPro)|GO:0006221(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02087 K01937 CTP synthase [EC:6.3.4.2]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3981856 Mimi Mimi16g02087 Mimi-Chr16:83008996 Mimi1g01390 Mimi-Chr1:80000625
4008945 Mimi Mimi16g02087 Mimi-Chr16:83008996 Mimi15g00569 Mimi-Chr15:52590406