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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu2g00138 ATGGGAGAAGTGAGATTATTTATTGATTTTGATGATGAAGATGATGATCAATATTTGTTGTATCCATCAATTTCTTCAGCAGAAATTATATTTTGTAGAATATGTCATGAAGCAGAGTTTGAAAGCTCTAAAACCATGGAATCCCCCTGTTCTTGTTCTGGTACAGTAAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGTGATGAAAAGGGCAACACCACATGTGAAATTTGTCTTCAGGAATTTGAACCTGGATACTCATCCTCTCTAAAACTCATCCAAAACCATAGAATAGTGAGTTTGGAGGTGCCTGAAACTGATGTTACTTCTGCCATTATTGTTCAACAAGAAAGGACTGCTGAAGCAGAATATCCGCAGTGTTCGTCCACTGCTGATACAAGCGCTTATATATGCAGATTTTTTGGTCTCATTGTTACACTACTTCTACTGGTGAGACATTTGTGTGTATTGTGGATTGAAGGAACAGGGGATTACCCGTTTACGCTCTTAACTTTGTTGGTTATGAGGGCTAGTGGGATAGTAATCCCTATGTACATAATCATGCGCACAGTTGACACCGTACATAAAGCCATTACTCGACGATATCAGGTTCCGGATGATGGCAACCAACGGCAAGCAGTATAG 648 39.66 MGEVRLFIDFDDEDDDQYLLYPSISSAEIIFCRICHEAEFESSKTMESPCSCSGTVKFAHRDCIQRWCDEKGNTTCEICLQEFEPGYSSSLKLIQNHRIVSLEVPETDVTSAIIVQQERTAEAEYPQCSSTADTSAYICRFFGLIVTLLLLVRHLCVLWIEGTGDYPFTLLTLLVMRASGIVIPMYIIMRTVDTVHKAITRRYQVPDDGNQRQAV 215
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu2g00138 215 FunFam E3 ubiquitin-protein ligase MARCH4 22 89 - -
Hetu2g00138 215 Pfam Protein of unknown function (DUF3675) 85 192 IPR022143 -
Hetu2g00138 215 ProSiteProfiles Zinc finger RING-CH-type profile. 24 86 IPR011016 GO:0008270(InterPro)
Hetu2g00138 215 SUPERFAMILY RING-U-box 27 83 - -
Hetu2g00138 215 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 21 89 IPR013083 -
Hetu2g00138 215 SMART ringv-2 31 80 IPR011016 GO:0008270(InterPro)
Hetu2g00138 215 Pfam RING-variant domain 32 79 IPR011016 GO:0008270(InterPro)
Hetu2g00138 215 PANTHER RING-FYVE-PHD ZINC FINGER DOMAIN-CONTAINING 22 204 IPR033275 GO:0004842(PANTHER)|GO:0016020(PANTHER)|GO:0016567(PANTHER)
Hetu2g00138 215 CDD RING-CH-C4HC3-MARCH 32 79 - -
Hetu2g00138 215 ProSiteProfiles Zinc finger RING-type profile. 32 79 IPR001841 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu2g00138 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3356501 Hetu Hetu2g00138 Hetu-Chr2:4205397 Hetu42g01088 Hetu-Chr42:42427591
3528704 Hetu Hetu1g00080 Hetu-Chr1:3392682 Hetu2g00138 Hetu-Chr2:4205397
3538158 Hetu Hetu10g01456 Hetu-Chr10:63013908 Hetu2g00138 Hetu-Chr2:4205397
3578626 Hetu Hetu2g00059 Hetu-Chr2:1821459 Hetu2g00138 Hetu-Chr2:4205397
3579784 Hetu Hetu2g00138 Hetu-Chr2:4205397 Hetu3g00074 Hetu-Chr3:3324923
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hetu1g00080 . 68 127 HMGR gene family AT4G34100 34.426 2.03e-09 55.1
Hetu2g00059 . 68 127 HMGR gene family AT4G34100 34.426 1.37e-09 55.5
Hetu2g00138 . 68 127 HMGR gene family AT4G34100 34.426 1.37e-09 55.5
Hetu2g01238 . 162 272 HMGR gene family AT1G76490 43.86 3.11e-20 82.8
Hetu2g01430 HSH 112 157 HMGR gene family AT4G34100 43.478 1.32e-06 44.7
Hetu3g00074 . 68 127 HMGR gene family AT4G34100 34.426 1.37e-09 55.5
Hetu3g01447 HSH 151 313 HMGR gene family AT4G34100 38.037 3.30e-24 96.7
Hetu4g01916 . 68 131 HMGR gene family AT4G34100 40.625 5.88e-09 55.1
Hetu5g00170 . 789 867 HMGR gene family AT4G34100 48.101 6.04e-20 83.6
Hetu5g01740 . 68 131 HMGR gene family AT4G34100 40.625 1.10e-08 54.7
Hetu6g00171 HSH 805 861 HMGR gene family AT4G34100 50.877 4.00e-13 63.9
Hetu6g01896 . 68 131 HMGR gene family AT4G34100 40.625 1.10e-08 54.7
Hetu7g02245 ACH,HSH,WGDA 56 1107 HMGR gene family AT4G34100 74.48 0.0 1571.0
Hetu8g02071 HSH,WGDA 67 1107 HMGR gene family AT4G34100 74.117 0.0 1566.0
Hetu9g00847 . 234 343 HMGR gene family AT4G34100 60.177 5.50e-37 132.0
Hetu9g02227 HSH,WGDA 56 1107 HMGR gene family AT4G34100 74.386 0.0 1570.0
Hetu10g01456 . 68 131 HMGR gene family AT4G34100 35.385 1.19e-09 55.8
Hetu11g00551 . 230 362 HMGR gene family AT4G34100 53.285 4.78e-35 126.0
Hetu12g01339 . 68 131 HMGR gene family AT4G34100 35.385 1.52e-09 55.8
Hetu13g00605 . 68 129 HMGR gene family AT4G34100 40.323 1.17e-09 57.8
Hetu14g00716 . 68 116 HMGR gene family AT4G34100 42.857 3.10e-08 53.5
Hetu15g00543 . 68 129 HMGR gene family AT4G34100 40.323 1.26e-09 57.8
Hetu16g01135 HSH,WGDA 67 123 HMGR gene family AT4G34100 40.351 5.67e-11 62.8
Hetu17g00319 . 68 136 HMGR gene family AT4G34100 35.135 1.02e-10 58.9
Hetu17g00968 HSH,WGDA 67 123 HMGR gene family AT4G34100 40.351 5.29e-11 62.8
Hetu18g00467 . 68 130 HMGR gene family AT4G34100 37.5 7.61e-11 59.3
Hetu18g01214 HSH,WGDA 67 123 HMGR gene family AT4G34100 40.351 4.40e-11 63.2
Hetu22g00541 . 68 129 HMGR gene family AT4G34100 38.71 8.02e-10 57.4
Hetu22g00919 HSH 51 632 HMGR gene family AT1G76490 71.048 0.0 856.0
Hetu22g02502 . 68 129 HMGR gene family AT4G34100 40.323 1.09e-10 60.1
Hetu23g00576 . 68 129 HMGR gene family AT4G34100 38.71 8.88e-10 57.0
Hetu23g00893 HSH 51 632 HMGR gene family AT1G76490 71.405 0.0 857.0
Hetu23g02546 . 68 129 HMGR gene family AT4G34100 40.323 6.59e-10 57.8
Hetu23g03504 . 68 129 HMGR gene family AT4G34100 40.323 6.59e-10 57.8
Hetu24g00640 . 68 129 HMGR gene family AT4G34100 38.71 7.57e-10 57.4
Hetu24g01042 HSH 51 557 HMGR gene family AT1G76490 69.598 0.0 733.0
Hetu24g02767 . 68 129 HMGR gene family AT4G34100 40.323 2.36e-12 60.1
Hetu25g02050 HSH 105 237 HMGR gene family AT1G76490 34.586 4.95e-21 85.5
Hetu25g02268 . 68 125 HMGR gene family AT4G34100 41.379 4.13e-10 58.5
Hetu25g02578 WGDA 67 1107 HMGR gene family AT4G34100 74.19 0.0 1533.0
Hetu26g02245 HSH 105 237 HMGR gene family AT1G76490 34.586 6.62e-21 85.1
Hetu26g02444 . 68 125 HMGR gene family AT4G34100 41.379 1.91e-09 57.4
Hetu26g02782 HSH 299 346 HMGR gene family AT4G34100 59.615 1.84e-14 65.9
Hetu26g02799 . 299 346 HMGR gene family AT4G34100 59.615 1.84e-14 65.9
Hetu27g01134 . 68 129 HMGR gene family AT4G34100 37.097 1.17e-08 53.5
Hetu27g02267 HSH 105 169 HMGR gene family AT1G76490 53.846 1.78e-20 84.0
Hetu27g02479 . 68 125 HMGR gene family AT4G34100 41.379 1.72e-09 57.4
Hetu27g02798 . 299 346 HMGR gene family AT4G34100 56.25 2.35e-10 53.5
Hetu27g02799 HSH 299 346 HMGR gene family AT4G34100 56.25 2.35e-10 53.5
Hetu27g02840 . 67 1107 HMGR gene family AT4G34100 74.571 0.0 1543.0
Hetu30g02235 . 306 348 HMGR gene family AT4G34100 72.093 9.35e-19 77.0
Hetu32g01097 . 220 328 HMGR gene family AT4G34100 58.716 4.02e-27 103.0
Hetu33g00819 . 294 339 HMGR gene family AT4G34100 63.043 3.20e-13 61.2
Hetu34g00472 HSH 411 559 HMGR gene family AT1G76490 86.577 3.47e-90 273.0
Hetu34g02033 . 68 142 HMGR gene family AT4G34100 33.333 3.90e-10 58.5
Hetu35g00739 HSH 17 632 HMGR gene family AT1G76490 67.901 0.0 847.0
Hetu35g02115 . 68 141 HMGR gene family AT4G34100 33.784 8.86e-10 57.4
Hetu36g00409 HSH 95 632 HMGR gene family AT1G76490 74.51 0.0 848.0
Hetu36g00410 HSH 95 632 HMGR gene family AT1G76490 74.51 0.0 848.0
Hetu36g01947 . 68 142 HMGR gene family AT4G34100 33.333 3.90e-10 58.5
Hetu39g03114 . 72 110 HMGR gene family AT4G34100 89.744 3.00e-20 84.3
Hetu42g01088 . 45 119 HMGR gene family AT4G34100 33.333 2.15e-11 61.6
Hetu43g00491 . 218 258 HMGR gene family AT1G76490 63.415 9.90e-13 60.5
Hetu43g00941 . 344 379 HMGR gene family AT1G76490 80.556 9.22e-14 62.0
Hetu43g01600 . 68 129 HMGR gene family AT4G34100 37.097 1.87e-09 56.6
Hetu44g00922 HSH 229 440 HMGR gene family AT1G76490 79.717 4.46e-126 368.0
Hetu44g01483 . 68 129 HMGR gene family AT4G34100 37.097 1.79e-09 56.6
Hetu45g01014 HSH 51 632 HMGR gene family AT1G76490 68.473 0.0 828.0
Hetu45g01641 . 68 129 HMGR gene family AT4G34100 37.097 1.52e-09 57.0
Hetu46g01147 HSH 37 341 HMGR gene family AT4G34100 74.76 1.53e-151 451.0
Hetu46g01968 HSH 51 632 HMGR gene family AT1G76490 73.368 0.0 874.0
Hetu46g02322 HSH 50 1067 HMGR gene family AT4G34100 71.065 0.0 1455.0
Hetu47g01108 ACH 37 1108 HMGR gene family AT4G34100 68.75 0.0 1450.0
Hetu47g01970 HSH 51 632 HMGR gene family AT1G76490 73.024 0.0 871.0
Hetu47g02307 HSH 50 1067 HMGR gene family AT4G34100 70.968 0.0 1452.0
Hetu48g00938 . 595 1108 HMGR gene family AT4G34100 70.25 0.0 717.0
Hetu48g00939 HSH 37 603 HMGR gene family AT4G34100 66.84 0.0 738.0
Hetu48g01730 . 51 632 HMGR gene family AT1G76490 73.368 0.0 873.0
Hetu48g01884 HSH 50 1067 HMGR gene family AT4G34100 70.98 0.0 1453.0
Hetu49g00143 . 68 142 HMGR gene family AT4G34100 34.667 1.97e-10 59.3
Hetu49g02572 HSH 51 632 HMGR gene family AT1G76490 68.151 0.0 813.0
Hetu49g02573 HSH 93 631 HMGR gene family AT1G76490 67.159 0.0 757.0
Hetu49g03832 . 68 141 HMGR gene family AT4G34100 36.486 2.86e-10 59.3
Hetu50g00092 . 68 141 HMGR gene family AT4G34100 35.135 3.77e-09 56.6
Hetu50g02341 HSH 51 632 HMGR gene family AT1G76490 67.979 0.0 813.0
Hetu50g02342 HSH 94 379 HMGR gene family AT1G76490 56.055 4.65e-106 324.0
Hetu50g03529 . 68 142 HMGR gene family AT4G34100 36.0 3.02e-10 58.5
Hetu51g00213 . 68 142 HMGR gene family AT4G34100 34.667 1.97e-10 59.3
Hetu51g00300 . 68 142 HMGR gene family AT4G34100 34.667 1.97e-10 59.3
Hetu51g02601 HSH 51 632 HMGR gene family AT1G76490 67.979 0.0 810.0
Hetu51g02603 HSH 109 631 HMGR gene family AT1G76490 69.025 0.0 760.0
Hetu51g03892 . 68 141 HMGR gene family AT4G34100 36.486 2.69e-10 59.7