AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01285 ATGAAGTACGTGTTGGTGACCGGAGGCGTGGTTAGTGGCCTCGGCAAAGGCGTAACCGCCAGTAGCATTGGCGTTGTTCTTAAGGCATGCGGCCTTCGCGTCACTTCAATTAAAATCGATCCATATTTGAACACGGATGCTGGTACCATGTCTCCGTTTGAACATGGAGAGGTTTTTGTTCTTGATGATGGTGGAGAGGTCGATCTGGATCTCGGTAACTATGAACGGTTCTTAGATGTGAGACTTACCAGGGATAACAACATAACAACTGGAAAGATTTATCAGTCGGTTCTTGAGAAGGAGCGAAAAGGGGATTACCTTGGAAAGACGGTCCAGGTGGTCCCGCACATAACAGATGCGATTATGGATTGGATAGAGTCGGTTTCTGTTATCCCGGTTGATGGCAAAGAGGGGCCTGCAGATGTTTGTGTGATAGAATTAGGAGGAACAGTTGGTGACATTGAGTCTATGCCGTTTATAGAGGCTTTGCGACAGTTATTTTTCTCAAAAGGACCAGATAATTTCTGCCTGATTCATGTTAGCCTTGTACCGGTACTTGGTGTTGTTGGGGAACAGAAAACAAAACCTACACAACACAGTGTCCGAGAACTGCGAGCGTTAGGCCTAACACCTCACTTTTTAGCTTGTCGGTCTGCTCAGCCATTATTGGAAAATACAAAGCAAAAACTCTCACAATTTTGTCATGTGCCTGGTGCTAACATTCTCAATATACATGATGTTCCAAACATTTGGCACGTGCCTCTTTTACTTCGTAATCAAAATGCTCATGAGGCTATCCTAAAACAACTAGCACTAGTTAGTGTAGCCAAATCTCCAAATTTACAAGAGTGGACTACTAGGGCTGAAACTTTTGACAGTCTCACCAATTCTGTCAAGATTGCAATGGTGGGAAAATATGTTGGTCTAACCGACTCTTATTTGTCTGTTATTAAGGCTCTTCTTCATGCCTGCATTGCATGTTCATTAAAACCATCAATTGAATGGATTGCAGCTTCTGATCTTGAAGACGAAAGTGCCAAATCGACACCAGCAGCTCATTCAAAGGCCTGGGAGACACTAAGGAATTCAGCATGTGTTTTGGTTCCTGGTGGATTTGGTGACCGTGGTGTGAACGGGATGATATTAGCTGCTAAATATGCCCGAGAAAATAAAGTGCCATATCTTGGAATTTGTTTAGGCATGCAGATATCTGTTATTGAGATCTCTAGATCGATCTTGGGCTGGAAAGGGGCAAACAGTACTGAATTTGATGAGCATGCACCAAATCCTGTTGTAATATTCATGCCAGAGGGTTCAAGAACACACATGGGGAACACAATGAGACTCGGTTCTAGAAGAACCTTACTGCAGACTCCTGACTGTATCACTGCAAAACTGTATCACAATCCAGAGTATGTGGATGAGCGGCATCGTCATCGATACGAGGTGAATCCCGAGGTTGTCGGAGATTTGGAGAAGACCGGTTTAAGATTTGTGGGGAAGGATGAAAGTGGTCAACGGATGGAGATTTTAGAGCTTCAAAACCATCCGTTTTATGTGGGAGCGCAGTTTCATCCTGAATATAAATCGGGTCCTGGAAGGCCTTCGGCACTATTTTTAGGTCTTATATTAGCAGCAACGGGGCAGTTGGAAGCGTATGTGAAGTCGCATCAGAATGGATCTGTTTAG 1689 44.05 MKYVLVTGGVVSGLGKGVTASSIGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRLTRDNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIMDWIESVSVIPVDGKEGPADVCVIELGGTVGDIESMPFIEALRQLFFSKGPDNFCLIHVSLVPVLGVVGEQKTKPTQHSVRELRALGLTPHFLACRSAQPLLENTKQKLSQFCHVPGANILNIHDVPNIWHVPLLLRNQNAHEAILKQLALVSVAKSPNLQEWTTRAETFDSLTNSVKIAMVGKYVGLTDSYLSVIKALLHACIACSLKPSIEWIAASDLEDESAKSTPAAHSKAWETLRNSACVLVPGGFGDRGVNGMILAAKYARENKVPYLGICLGMQISVIEISRSILGWKGANSTEFDEHAPNPVVIFMPEGSRTHMGNTMRLGSRRTLLQTPDCITAKLYHNPEYVDERHRHRYEVNPEVVGDLEKTGLRFVGKDESGQRMEILELQNHPFYVGAQFHPEYKSGPGRPSALFLGLILAATGQLEAYVKSHQNGSV 562
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01285 562 SUPERFAMILY Class I glutamine amidotransferase-like 297 548 IPR029062 -
Bial10g01285 562 CDD GATase1-CTP-Synthase 298 543 IPR033828 GO:0003883(InterPro)|GO:0006241(InterPro)
Bial10g01285 562 CDD CTPS-N 2 268 IPR017456 GO:0003883(InterPro)|GO:0006221(InterPro)
Bial10g01285 562 Pfam CTP synthase N-terminus 2 272 IPR017456 GO:0003883(InterPro)|GO:0006221(InterPro)
Bial10g01285 562 Gene3D - 1 292 IPR027417 -
Bial10g01285 562 FunFam CTP synthase 295 560 - -
Bial10g01285 562 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 299 552 - -
Bial10g01285 562 PANTHER CTP SYNTHASE 1 558 IPR004468 GO:0003883(PANTHER)|GO:0003883(InterPro)|GO:0006221(InterPro)|GO:0006241(PANTHER)|GO:0019856(PANTHER)|GO:0042802(PANTHER)
Bial10g01285 562 Pfam Glutamine amidotransferase class-I 309 543 IPR017926 -
Bial10g01285 562 Gene3D - 295 560 IPR029062 -
Bial10g01285 562 NCBIfam CTP synthase (glutamine hydrolyzing) 1 544 IPR004468 GO:0003883(InterPro)|GO:0006221(InterPro)
Bial10g01285 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 272 IPR027417 -
Bial10g01285 562 FunFam CTP synthase 1 292 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01285 K01937 CTP synthase [EC:6.3.4.2]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
182226 Bial10g01285 Bial22g00878
361538 Bial10g01285 Bial12g02730
361539 Bial10g01285 Bial12g02760
361540 Bial10g01285 Bial24g02577
361541 Bial10g01285 Bial24g02603
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
671091 Bial Bial10g01285 Bial-Chr10:12842540 Bial17g01686 Bial-Chr17:47926929
777566 Bial Bial10g01285 Bial-Chr10:12842540 Bial12g02730 Bial-Chr12:57470280
782168 Bial Bial10g01285 Bial-Chr10:12842540 Bial22g00878 Bial-Chr22:8395683
782957 Bial Bial10g01285 Bial-Chr10:12842540 Bial24g02577 Bial-Chr24:56602272