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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso28g00502 ATGAATTTCAGTCATCATCGCCTTCCTTTAAAAGCCTCACCACCACCACTAACCAAAATCAAAATTAAAGCCATGGGAGAAGTGAGATTATTTGTGAACTTTAATGATGATGATGAATATTTGTTGTATCCATCAATATCATCATCAGAAATCGTATTTTGCAGAATATGCCATGAAGCAGAGTTTGAAAGCTCTAAAACCATGGAGTCTCCATGTTCTTGTTCTGGTACTGTAAAGTTTGCTCACAGAGATTGCATACAGATATGGTGTGATGAAAAGGGTAACACCACTTGTGAGATTTGTCTTCAGGAATTTGAACCAGGATACTCATCCCCTCTCAAACTCATCCAAAACCAAGGATTAGTAAGTGTGGAGGTGACTGAAACTGAGGGTAATTCTGTCATTGTTGCTCAACAAGAAAGGACTGTTGATCCGGAGTACCCGCAGAGTTCATCTGCCGCGGATACAAGTGCTTCTATTTGCAGATTTCTGGGTATTGCAGTTACCCTAGTTCTACTGGTGAGACATTTGTTTGTATTGTTGAAGGAAGGAACAGGGGATTACCCGTTTACGCTCTTAACTCTTGTAGTTATGAGGGCTAGTGGGATATTAGTCCCTATGTACATAATCATGCACACGGTTGACTCCATCCATAAGACCATCATCGCAAGTCATTATCAGGTTCCTGAAGATGGCAGCCAGAGGCAGCAGTATAGATTGGTTTAG 726 41.05 MNFSHHRLPLKASPPPLTKIKIKAMGEVRLFVNFNDDDEYLLYPSISSSEIVFCRICHEAEFESSKTMESPCSCSGTVKFAHRDCIQIWCDEKGNTTCEICLQEFEPGYSSPLKLIQNQGLVSVEVTETEGNSVIVAQQERTVDPEYPQSSSAADTSASICRFLGIAVTLVLLVRHLFVLLKEGTGDYPFTLLTLVVMRASGILVPMYIIMHTVDSIHKTIIASHYQVPEDGSQRQQYRLV 241
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso28g00502 241 ProSiteProfiles Zinc finger RING-CH-type profile. 46 108 IPR011016 GO:0008270(InterPro)
Smso28g00502 241 Pfam RING-variant domain 54 101 IPR011016 GO:0008270(InterPro)
Smso28g00502 241 SUPERFAMILY RING-U-box 48 105 - -
Smso28g00502 241 PANTHER RING-FYVE-PHD ZINC FINGER DOMAIN-CONTAINING 44 224 IPR033275 GO:0004842(PANTHER)|GO:0016020(PANTHER)|GO:0016567(PANTHER)
Smso28g00502 241 CDD RING-CH-C4HC3-MARCH 54 101 - -
Smso28g00502 241 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 43 111 IPR013083 -
Smso28g00502 241 FunFam E3 ubiquitin-protein ligase MARCH4 44 111 - -
Smso28g00502 241 Pfam Protein of unknown function (DUF3675) 107 213 IPR022143 -
Smso28g00502 241 SMART ringv-2 53 102 IPR011016 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso28g00502 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
357511 Smso1g03589 Smso28g00502
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4942697 Smso Smso10g00657 Smso-Chr10:6823192 Smso28g00502 Smso-Chr28:13976655
4952170 Smso Smso13g01230 Smso-Chr13:87250372 Smso28g00502 Smso-Chr28:13976655
4967735 Smso Smso1g03589 Smso-Chr1:121001241 Smso28g00502 Smso-Chr28:13976655
4968854 Smso Smso20g00758 Smso-Chr20:13209790 Smso28g00502 Smso-Chr28:13976655
4984982 Smso Smso28g00502 Smso-Chr28:13976655 Smso4g00397 Smso-Chr4:5106346
5002818 Smso Smso28g00502 Smso-Chr28:13976655 Smso28g00504 Smso-Chr28:14001380
5007514 Smso Smso28g00501 Smso-Chr28:13951930 Smso28g00502 Smso-Chr28:13976655
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Smso29g00316 ACH 67 252 HMGR gene family AT4G34100 66.154 2.85e-79 255.0
Smso29g00317 . 294 408 HMGR gene family AT4G34100 69.231 3.42e-44 151.0
Smso29g00318 . 643 755 HMGR gene family AT4G34100 64.706 9.30e-45 153.0
Smso29g00319 ACH 826 971 HMGR gene family AT4G34100 62.667 7.06e-59 197.0
Smso28g00501 ACH 68 132 HMGR gene family AT4G34100 34.848 4.45e-09 53.9
Smso28g00502 SST 68 125 HMGR gene family AT4G34100 35.593 7.95e-09 53.9
Smso28g00504 SST,WGDA 68 125 HMGR gene family AT4G34100 35.593 7.95e-09 53.9
Smso27g00596 . 68 129 HMGR gene family AT4G34100 40.323 3.22e-09 56.6
Smso27g02371 . 492 552 HMGR gene family AT1G76490 49.18 5.41e-10 57.4
Smso26g02816 . 479 512 HMGR gene family AT4G34100 67.647 9.68e-10 53.5
Smso25g00886 . 52 360 HMGR gene family AT4G34100 78.205 1.34e-158 470.0
Smso25g00887 SST 385 766 HMGR gene family AT4G34100 68.542 0.0 530.0
Smso25g00888 SST 881 1107 HMGR gene family AT4G34100 75.771 1.32e-113 348.0
Smso25g02480 . 68 125 HMGR gene family AT4G34100 41.379 2.47e-10 58.2
Smso25g02789 . 51 632 HMGR gene family AT1G76490 72.589 0.0 871.0
Smso24g00763 ACH,SST,WGDA 67 1067 HMGR gene family AT4G34100 71.741 0.0 1478.0
Smso24g01259 SST 20 632 HMGR gene family AT1G76490 68.78 0.0 841.0
Smso24g02780 . 68 142 HMGR gene family AT4G34100 33.333 1.62e-10 59.3
Smso23g01104 . 38 129 HMGR gene family AT4G34100 31.579 1.94e-09 56.2
Smso23g01357 . 68 118 HMGR gene family AT4G34100 45.098 9.40e-10 57.8
Smso22g01681 . 68 129 HMGR gene family AT4G34100 40.323 2.48e-10 58.9
Smso21g00054 ACH,SST 220 632 HMGR gene family AT1G76490 79.302 0.0 706.0
Smso21g00429 . 68 129 HMGR gene family AT4G34100 35.484 1.08e-07 51.6
Smso21g01309 . 68 142 HMGR gene family AT4G34100 36.0 3.83e-10 58.9
Smso21g02049 ACH,SST 87 633 HMGR gene family AT1G76490 68.727 0.0 781.0
Smso20g00758 . 68 139 HMGR gene family AT4G34100 35.616 7.26e-11 59.3
Smso19g00845 . 68 142 HMGR gene family AT4G34100 34.667 5.20e-10 58.2
Smso18g01284 ACH,SST,WGDA 51 1107 HMGR gene family AT4G34100 74.136 0.0 1581.0
Smso17g02790 . 68 124 HMGR gene family AT4G34100 43.86 2.42e-09 56.6
Smso14g00238 . 68 125 HMGR gene family AT4G34100 41.379 2.47e-10 58.2
Smso14g00554 . 51 632 HMGR gene family AT1G76490 71.574 0.0 863.0
Smso14g01996 . 49 129 HMGR gene family AT4G34100 34.568 3.49e-10 58.2
Smso13g01230 . 68 139 HMGR gene family AT4G34100 35.616 8.33e-10 56.2
Smso12g01233 . 68 132 HMGR gene family AT4G34100 36.923 4.07e-11 58.9
Smso10g00657 ACH 68 141 HMGR gene family AT4G34100 36.0 9.56e-11 58.9
Smso10g03460 ACH,WGDA 67 1107 HMGR gene family AT4G34100 58.318 0.0 1154.0
Smso9g00851 ACH,SST,WGDA 100 1102 HMGR gene family AT4G34100 71.04 0.0 1448.0
Smso8g01736 . 68 124 HMGR gene family AT4G34100 43.86 4.84e-09 55.8
Smso7g00280 ACH 67 1108 HMGR gene family AT4G34100 71.962 0.0 1492.0
Smso6g00178 . 68 141 HMGR gene family AT4G34100 33.784 6.68e-10 57.8
Smso6g01828 SST 51 632 HMGR gene family AT1G76490 72.867 0.0 857.0
Smso5g00797 SST,WGDA 43 1067 HMGR gene family AT4G34100 71.04 0.0 1475.0
Smso4g00061 ACH,SST 51 632 HMGR gene family AT1G76490 73.019 0.0 869.0
Smso4g00397 . 68 129 HMGR gene family AT4G34100 35.484 9.57e-08 51.2
Smso4g01343 . 68 142 HMGR gene family AT4G34100 36.0 2.74e-10 58.9
Smso4g02129 ACH,SST 142 633 HMGR gene family AT1G76490 70.648 0.0 722.0
Smso3g00628 . 68 129 HMGR gene family AT4G34100 40.323 1.93e-09 57.4
Smso2g01192 . 199 631 HMGR gene family AT1G76490 73.21 0.0 655.0
Smso2g02050 . 38 129 HMGR gene family AT4G34100 31.579 1.23e-09 56.6
Smso2g02618 . 68 129 HMGR gene family AT4G34100 41.935 3.33e-10 58.9
Smso1g02018 SST,WGDA 52 1107 HMGR gene family AT4G34100 74.6 0.0 1566.0
Smso1g03589 ACH,SST,WGDA 68 132 HMGR gene family AT4G34100 34.848 1.61e-09 55.5